Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0163
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0373 + 18281644-18281856                                         29   2.4  
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186...    28   3.1  
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196...    27   5.5  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    27   9.6  
05_03_0674 - 16842301-16842320,16842651-16842714,16842843-168429...    27   9.6  

>02_03_0373 + 18281644-18281856
          Length = 70

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 54  SSVGVLVRVVFYFIIF-VCALTIFIHILA 137
           S V VLV  VF+F++F V  + I IH+ A
Sbjct: 41  SGVSVLVHAVFFFVLFTVLVVAIGIHVRA 69


>03_01_0239 +
           1859446-1860112,1861218-1861338,1861431-1861618,
           1861710-1861804
          Length = 356

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 238 ALPTPVAGALMMTIFVGVRNNNVNFKCPAIRTGT 137
           AL TP A AL++ + +    +  NF C A+ +GT
Sbjct: 7   ALATPAAAALLLLVLLAAPASAANFTC-AVASGT 39


>09_02_0602 -
           11118788-11119178,11119262-11119451,11119590-11119658,
           11119890-11120016,11120134-11120399,11120760-11120872,
           11121693-11121764,11121860-11121998,11124277-11124360,
           11125278-11125771,11127604-11128187
          Length = 842

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 277 VFSTWIPSFESIGCMVSSYNGTPVKTTVDL 366
           +F  W  S+ S+ C+V++Y GTP   TV+L
Sbjct: 131 MFVAWA-SWASV-CLVNTYQGTPFVNTVEL 158


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 122 YTYTSCTRPYRWAFKIN 172
           + Y++  RPYRW F I+
Sbjct: 294 FVYSNSNRPYRWVFAIS 310


>05_03_0674 -
           16842301-16842320,16842651-16842714,16842843-16842983,
           16843382-16843515,16844437-16844501,16844886-16844923,
           16845029-16845148,16846129-16846458
          Length = 303

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 39  LYNARSSVGVLVRVVFYFIIFVCALTI 119
           L+  R + GVLV V +Y +  VC L +
Sbjct: 21  LFPLRLAAGVLVLVAYYLVCRVCTLRV 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,967
Number of Sequences: 37544
Number of extensions: 232877
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)