Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0163
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)           28   4.3  
SB_13706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)                     28   4.3  
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)        28   4.3  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   4.3  
SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)                 27   7.5  
SB_10855| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_55280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  TCCVLLYNFCLCINYLYTYTSCTRPYRWAFKINI 175
           T C++  N C+ +   + Y  C R Y+ AFK+ I
Sbjct: 324 TICMIYANHCINV---FIYAGCNRDYKRAFKVII 354


>SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)
          Length = 151

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  CVLLYNFCLCINYLYTYTS 136
           C+ LY   LC N++ TYTS
Sbjct: 45  CLSLYGLPLCTNFIMTYTS 63


>SB_13706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 60  VGVLVRVVFYFIIFVCALTIFIHIL 134
           +GV+V VV  FIIF+    IFI I+
Sbjct: 91  IGVIVIVVIGFIIFIIIFVIFIIII 115


>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 173

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 167 INIIISHPHKDCHH*RPRNWCRECQHSYKFSLSSKYMYFLHGYQVSS 307
           I II++H  K  H  R  +  R  QH Y   LSS   Y   G   S+
Sbjct: 120 IIIIMTHNQKRIHRRRHNHHHRNHQHHYHHRLSSSLPYAAVGCMTSN 166


>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
          Length = 847

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 116 YLYTYTSCTRPYRWAFKINIIISHPHKDCHH---*RPRNWCRECQHSYK 253
           +LY  T   +P  +A+ +  +I HP K  H      P+ W   C+ S K
Sbjct: 332 HLYADTGRWKPLPFAYNVRRLIHHPMKAFHFACCPPPKPWKEHCRPSSK 380


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 173 IIISHPHKDCHH*--RPRNWCRECQHSYKFSLSSKYMYFLHGY 295
           I I H H++ H+   R  ++C  C H Y +     Y ++ H Y
Sbjct: 3   ITIRHRHQNRHNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHY 45


>SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
          Length = 366

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 62  WRLSTCCVLLYNFCLCINYL---YTYTSCTRPYRWAFKI 169
           W L   C LL+ FC C++     + +   +R +R  FK+
Sbjct: 283 WLLPRSCHLLWTFCGCLSSAVNPFVFGLTSRSFRQGFKV 321


>SB_10855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 232 PTPVAGALMMTIFVGVRNNNVNFKCP 155
           P PV GAL M    G+   N N + P
Sbjct: 6   PIPVLGALCMMFLAGIEQPNSNHESP 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,610
Number of Sequences: 59808
Number of extensions: 300277
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)