Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0163
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    32   0.23 
Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    28   2.8  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   5.0  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   5.0  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   5.0  

>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 280 FSTWIPSFESIGCMVSSYNGTPVKTTVDLCISVDFFCA 393
           ++ W+P F  + C+V+SY G       +  +S++ FCA
Sbjct: 76  YTNWVPDFAFVCCVVASYYGVFFNLLSNGLLSLNRFCA 113


>Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical
           protein C23H4.2 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 51  RSSVGVLVRVVFYFIIFVCALTIFIHILA 137
           R+ + +L +  FY II VCA+TI + IL+
Sbjct: 541 RTDISILYQWWFYLIIAVCAMTIGLVILS 569


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 78  HVLRRQPKNAHYTDNAIKISTK 13
           H+ RR+P++AHY  N I +  K
Sbjct: 183 HLRRRRPRSAHYDPNTITLPAK 204


>AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical
          protein ZC123.4c protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 78 HVLRRQPKNAHYTDNAIKISTK 13
          H+ RR+P++AHY  N I +  K
Sbjct: 27 HLRRRRPRSAHYDPNTITLPAK 48


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 78  HVLRRQPKNAHYTDNAIKISTK 13
           H+ RR+P++AHY  N I +  K
Sbjct: 183 HLRRRRPRSAHYDPNTITLPAK 204


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 80   CVLLYNFCLCINYLYTYTSCTRPYRWAFKINII 178
            CV     CLC N     TS   PYR  F + I+
Sbjct: 1592 CVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1624


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 80   CVLLYNFCLCINYLYTYTSCTRPYRWAFKINII 178
            CV     CLC N     TS   PYR  F + I+
Sbjct: 1495 CVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1527


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 80   CVLLYNFCLCINYLYTYTSCTRPYRWAFKINII 178
            CV     CLC N     TS   PYR  F + I+
Sbjct: 1506 CVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIV 1538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,647,929
Number of Sequences: 27780
Number of extensions: 224595
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)