Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IW48 Cluster: SDHA protein; n=11; Eutheria|Rep: SDHA ...    46   7e-04
UniRef50_P31040 Cluster: Succinate dehydrogenase [ubiquinone] fl...    46   7e-04
UniRef50_Q4RFG4 Cluster: Chromosome 8 SCAF15119, whole genome sh...    38   0.14 
UniRef50_A0CJV9 Cluster: Chromosome undetermined scaffold_2, who...    32   9.2  
UniRef50_A0BBI9 Cluster: Chromosome undetermined scaffold_1, who...    32   9.2  

>UniRef50_Q8IW48 Cluster: SDHA protein; n=11; Eutheria|Rep: SDHA
           protein - Homo sapiens (Human)
          Length = 519

 Score = 45.6 bits (103), Expect = 7e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 494 LEYRPVIDKTLNEADCATVPPAIRSY 519


>UniRef50_P31040 Cluster: Succinate dehydrogenase [ubiquinone]
           flavoprotein subunit, mitochondrial precursor; n=534;
           cellular organisms|Rep: Succinate dehydrogenase
           [ubiquinone] flavoprotein subunit, mitochondrial
           precursor - Homo sapiens (Human)
          Length = 664

 Score = 45.6 bits (103), Expect = 7e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 639 LEYRPVIDKTLNEADCATVPPAIRSY 664


>UniRef50_Q4RFG4 Cluster: Chromosome 8 SCAF15119, whole genome
           shotgun sequence; n=4; cellular organisms|Rep:
           Chromosome 8 SCAF15119, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 696

 Score = 37.9 bits (84), Expect = 0.14
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID +L+  +C+ VPP IR+Y
Sbjct: 671 LQYRPVIDSSLNEQDCAHVPPAIRSY 696


>UniRef50_A0CJV9 Cluster: Chromosome undetermined scaffold_2, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_2,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 258

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           LTYR VI +T D  E  TVPP  R Y
Sbjct: 233 LTYRDVITKTQDPKEFDTVPPKKRVY 258


>UniRef50_A0BBI9 Cluster: Chromosome undetermined scaffold_1, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_1,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 253

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           LTYR VI +T D  E  TVPP  R Y
Sbjct: 228 LTYRDVITKTQDPKEFDTVPPKKRVY 253


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,441,768
Number of Sequences: 1657284
Number of extensions: 6276034
Number of successful extensions: 12937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12931
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)