Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1007 - 23495941-23496486,23496933-23497094,23497184-234973...    28   4.0  
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589...    28   4.0  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     28   5.2  
06_01_1085 - 8886868-8887556,8887629-8888574                           28   5.2  
06_03_0455 + 20978658-20978677,20979104-20979608                       27   6.9  
03_06_0019 - 31078669-31080081                                         27   9.1  
02_02_0210 + 7873962-7874753                                           27   9.1  
02_02_0209 + 7866348-7867139                                           27   9.1  

>08_02_1007 -
           23495941-23496486,23496933-23497094,23497184-23497361,
           23497473-23497882
          Length = 431

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY*PPPTPQGYIETFLNVN 140
           LT  PV+ R +  A+  T  P  RT   PP   G I T L+++
Sbjct: 14  LTVNPVVQRAVVGAQLPTTSP-CRTPKSPPPSYGSIVTVLSID 55


>03_05_1064 -
           30058253-30058467,30058549-30058762,30058846-30058936,
           30059361-30059617,30059702-30059902,30059975-30060065,
           30060510-30060573,30060754-30061021,30061118-30061249
          Length = 510

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 86  GADDGRHGAALGGVERAVDDGAVGEASC 3
           G +D +  AAL  +E A +D  +G+ASC
Sbjct: 82  GEEDEQRKAALDKLENASEDSLLGQASC 109


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  IDRTLDAAECSTVPPVIRTY*PPPTPQG 113
           +D+   AA  S   P+++T  PPP P G
Sbjct: 283 MDQAAAAAAASVCQPLLKTVAPPPPPHG 310


>06_01_1085 - 8886868-8887556,8887629-8888574
          Length = 544

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 125 CFNVALRCWRRLVGADDGRHGAAL 54
           C  VA+R + R  GAD GR GAA+
Sbjct: 20  CLVVAVRSYLRSGGADGGRGGAAI 43


>06_03_0455 + 20978658-20978677,20979104-20979608
          Length = 174

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 7/32 (21%)
 Frame = -2

Query: 98  RRLVGAD---DGRHGAALGGVER----AVDDG 24
           RR+VGA+   DGR GA  GGV +    AVD G
Sbjct: 81  RRVVGAEAAADGRRGAEAGGVRKHAGWAVDSG 112


>03_06_0019 - 31078669-31080081
          Length = 470

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 95  RLVGA-DDGRHGAALGGVER-AVDDG 24
           R++GA DD  HG  LGGV+  ++ DG
Sbjct: 47  RILGALDDASHGGELGGVDMVSISDG 72


>02_02_0210 + 7873962-7874753
          Length = 263

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 122 FNVALRCWRR--LVGADDGRHGAALGGVERAVD--DGAVGEAS 6
           +N  LRCWRR    GA   R G  +GG + A D  DG  G A+
Sbjct: 45  WNTPLRCWRRWWCSGATSRRGG--MGGRKDAGDEEDGEAGAAT 85


>02_02_0209 + 7866348-7867139
          Length = 263

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 122 FNVALRCWRR--LVGADDGRHGAALGGVERAVD--DGAVGEAS 6
           +N  LRCWRR    GA   R G  +GG + A D  DG  G A+
Sbjct: 45  WNTPLRCWRRWWCSGATSRRGG--MGGRKDAGDEEDGEAGAAT 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,903
Number of Sequences: 37544
Number of extensions: 170113
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)