Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)                 29   2.3  
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)           28   5.4  
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)                    27   7.1  

>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
          Length = 635

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 27  VIDRTLDAAECSTVPPVIRTY*PPPTPQ 110
           +I   +DA++C +VPP+I+    PP  Q
Sbjct: 588 LIQNNIDASDCPSVPPMIQASEVPPLTQ 615


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 27   VIDRTLDAAECSTVPPVIRTY*PPPTPQ 110
            +I   +DA++C +VPP+I+    PP  Q
Sbjct: 1033 LIQNKIDASDCPSVPPMIQASEVPPLTQ 1060


>SB_20320| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)
          Length = 417

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 488 TFKNHNK-CRIPS*RFIVYMNYSLLVYSHDT 399
           TFKNHNK  R+P   FIVY ++   +   DT
Sbjct: 206 TFKNHNKSMRVP---FIVYADFESFIKPIDT 233


>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
          Length = 491

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 234 ITFILNSGVSFEH*RSIGRAPHXGLCXSRVGHSRS-KMFQCSLAVL 100
           +T +LN  +  ++ R++   PH GLC  R G S+S K F   L+ L
Sbjct: 16  LTIVLNVKMVDKNIRTLTH-PHCGLCSQRRGSSKSRKTFGTCLSTL 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,146
Number of Sequences: 59808
Number of extensions: 201132
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)