Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D30648-1|BAA06332.1|  664|Homo sapiens flavoprotein subunit of c...    46   1e-04
BC041016-1|AAH41016.1|  519|Homo sapiens SDHA protein protein.         46   1e-04
BC001380-1|AAH01380.1|  664|Homo sapiens succinate dehydrogenase...    46   1e-04
AB208991-1|BAD92228.1|  670|Homo sapiens succinate dehydrogenase...    46   1e-04
L21936-1|AAA20683.1|  664|Homo sapiens succinate dehydrogenase f...    45   1e-04
AF171030-1|AAD51006.1|  664|Homo sapiens succinate dehydrogenase...    45   1e-04

>D30648-1|BAA06332.1|  664|Homo sapiens flavoprotein subunit of
           complex II protein.
          Length = 664

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 639 LEYRPVIDKTLNEADCATVPPAIRSY 664


>BC041016-1|AAH41016.1|  519|Homo sapiens SDHA protein protein.
          Length = 519

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 494 LEYRPVIDKTLNEADCATVPPAIRSY 519


>BC001380-1|AAH01380.1|  664|Homo sapiens succinate dehydrogenase
           complex, subunit A, flavoprotein (Fp) protein.
          Length = 664

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 639 LEYRPVIDKTLNEADCATVPPAIRSY 664


>AB208991-1|BAD92228.1|  670|Homo sapiens succinate dehydrogenase
           complex, subunit A, flavoprotein precursor variant
           protein.
          Length = 670

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 645 LEYRPVIDKTLNEADCATVPPAIRSY 670


>L21936-1|AAA20683.1|  664|Homo sapiens succinate dehydrogenase
           flavoprotein subunit protein.
          Length = 664

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+T+PP IR+Y
Sbjct: 639 LEYRPVIDKTLNEADCATIPPAIRSY 664


>AF171030-1|AAD51006.1|  664|Homo sapiens succinate dehydrogenase
           flavoprotein subunit protein.
          Length = 664

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID+TL+ A+C+TVPP IR+Y
Sbjct: 639 LGYRPVIDKTLNEADCATVPPAIRSY 664


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,372,806
Number of Sequences: 237096
Number of extensions: 930950
Number of successful extensions: 1349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)