Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...    42   4e-04
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...    38   0.004
D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...    35   0.041
Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical p...    27   6.2  

>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           LTYRPVID+TLD +E   VPP +R+Y
Sbjct: 615 LTYRPVIDKTLDKSETDWVPPKVRSY 640


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID TLD +E   VPP +R+Y
Sbjct: 621 LDYRPVIDTTLDKSETDWVPPKVRSY 646


>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  LTYRPVIDRTLDAAECSTVPPVIRTY 89
           L YRPVID TLD +E   V P +R+Y
Sbjct: 621 LDYRPVIDTTLDKSETDWVAPKVRSY 646


>Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical
           protein W02B12.4 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 435 VNYKPLRRNAAFIVVFKRCTNYYSRYL 515
           VN +  ++N  F+   K+CT+Y+  YL
Sbjct: 352 VNCQIYKKNVGFVNDLKQCTSYFRAYL 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,232
Number of Sequences: 27780
Number of extensions: 159762
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)