Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 404 HESTPADYNSCKL 442
           H STP  Y SCKL
Sbjct: 131 HPSTPIVYASCKL 143


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 359 WHCFICT 339
           WHCF CT
Sbjct: 607 WHCFNCT 613


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 432 HVNYKPLRRNAAFIVVFKRCTNY 500
           HVN++ L  N   ++   RC N+
Sbjct: 395 HVNFQILGANVNDLIRNSRCANF 417


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 93   PPPTPQGYIETFLNVNDQRE 152
            PPP P+ + +   + ND +E
Sbjct: 1860 PPPPPRNHDQNNSSFNDSKE 1879


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 RNAAFIVVFKRCTNYYSRY 512
           ++ AF  ++KR  +YY  Y
Sbjct: 414 KDPAFYRIYKRIIDYYHSY 432


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 RNAAFIVVFKRCTNYYSRY 512
           ++ AF  ++KR  +YY  Y
Sbjct: 414 KDPAFYRIYKRIIDYYHSY 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,668
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)