Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0160
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    31   0.62 

>At2g27170.1 68415.m06029 structural maintenance of chromosomes (SMC)
            family protein similar to basement membrane-associated
            chondroitin proteoglycan Bamacan [Rattus norvegicus]
            GI:1785540; contains Pfam profile PF02463: RecF/RecN/SMC
            N terminal domain. No suitalble start codon was
            identified.
          Length = 1207

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 194  KEVSGGRRTSGCVXLALVIHVQKCFNVALRCWRRLVGADDGRHGAALGG-VERAVDD 27
            K++SGG++T   V LAL+  +Q+C       +  +  A D ++  A+G  + R  DD
Sbjct: 1100 KQLSGGQKT--VVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADD 1154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,318
Number of Sequences: 28952
Number of extensions: 138651
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)