Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0159
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    27   1.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.9  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    25   5.2  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   5.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   9.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 437 YGNQHEVRVEHVAAIRGAVCTILTKYHAITHRNRCLRLLTPCHLGRRVWGRNG*GLAMIH 258
           YGNQ+E R EH+  +      + T++ A +     LR  TP       + R G G A + 
Sbjct: 160 YGNQYESREEHL-LLSLFQMVLTTEFEATSDVLSLLRANTPVSRMLTTYTRRGPGQAYLR 218

Query: 257 NL 252
           ++
Sbjct: 219 SI 220


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = -1

Query: 410 EHVAAIRGAVCTILTKYHAITHRNRCLRLLTPCHLGRRVWGRNG*GLAMIHNL 252
           EH+    G  C   T YH +T  +  +  +   H+   V       +A+++N+
Sbjct: 820 EHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYVGDSESKDVALLYNV 872


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 202 SDRCQIATAPSNRD--PCCRGKNSKTNGLVSNSHPPGQVPYLSLIN 71
           S+ C +A  P +RD  P   G++S  N  VSNS   GQV    +IN
Sbjct: 135 SENCYLAY-PDSRDHEPRTEGESSSPN--VSNSAVSGQVILWDVIN 177


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +1

Query: 85  GRGPVRAGDCSKPIR*FLNSYHGNTGRDLTVPSRFDICHFVLLLERDGTCILTVYAKLCI 264
           G G  R GD S PIR      HG   RD +   +  + +  +   R       +  +L I
Sbjct: 74  GTGHARVGDASSPIRRGGAKSHGPKPRDFSTKLQTQVYNLAM---RIALSTRFINNELTI 130

Query: 265 IANP 276
           + NP
Sbjct: 131 LENP 134


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 112 SHPPGQVPYLSLINWQ 65
           SH    +PY +L+NWQ
Sbjct: 145 SHSKKMLPYQALVNWQ 160


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 372 FNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISDDTQLSVDR 241
           FN  S   +P P+ SS++A  +       +W R S    LS  R
Sbjct: 158 FNDPSAIPNPSPLFSSAYATRINGSLRNDKWNRSSFSEALSSSR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,561
Number of Sequences: 5004
Number of extensions: 44578
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)