Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0159
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    30   1.3  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    29   1.7  
02_05_0723 + 31228782-31228994,31229098-31229193,31229469-312294...    29   3.0  
01_01_0245 + 2013821-2014171,2014278-2014671,2015158-2015289,201...    28   4.0  
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418...    27   6.9  
04_04_1553 - 34363848-34366058,34369087-34370451                       27   6.9  
12_02_0549 + 20323564-20323625,20323632-20323833                       27   9.1  

>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
            20424768-20425095,20425218-20426156,20427015-20427761,
            20428517-20428789
          Length = 1361

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +1

Query: 7    ERGSGRGLGSQTSGHNVVPAAS*LGTGRGPVRAGDCSKPIR*FLNSYHGNTGRDLTVPSR 186
            + G  R    Q S HN    +S  G+ R  + A   S+P+R       GNT R     SR
Sbjct: 898  KEGEQRNQREQRSAHNANRWSS--GSSRHDIIAAGNSRPMRWSHFPGSGNTRRSNGHDSR 955

Query: 187  FDICH 201
             ++CH
Sbjct: 956  LNVCH 960


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 469 SNPATSWQPRATETSTRCASNMLPRFA 389
           S PA  W+PR  E + + A  M PRFA
Sbjct: 371 SFPADHWEPRRRERARQRAIEMAPRFA 397


>02_05_0723 +
           31228782-31228994,31229098-31229193,31229469-31229492,
           31229663-31229881,31229957-31230025,31230230-31230316,
           31231122-31231226
          Length = 270

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 VCTILTKYHAITHRNRCLRLLTPCHLGRRVWGRNG 279
           +CT+L K + + +  R  RL  PCH    +  RNG
Sbjct: 230 ICTLLNKQYELQYHARFPRLNIPCHTLDGLVFRNG 264


>01_01_0245 +
           2013821-2014171,2014278-2014671,2015158-2015289,
           2015747-2015788,2016096-2017057
          Length = 626

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 193 CQIATAPSNRDP-CCRGKNSKTNGLVSNSHPPGQVPYLSLINWQPGQRCDRSFENR 29
           C  +T+P ++D  C +  +     L S  HPP     L  + WQP       + NR
Sbjct: 242 CSNSTSPCDQDDDCVKAFSLLLRELFSCIHPPVDEGCLRKLAWQPMTLSQEDWSNR 297


>12_02_0457 +
           19239816-19241319,19241337-19241632,19241729-19241829,
           19241939-19242029,19242158-19242268,19242360-19242425,
           19242457-19242462
          Length = 724

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 72  TGSRDNVVT---ARLRTESPTRTSLVP 1
           T  RD+  T   AR+ TESPTRTSL P
Sbjct: 35  TTDRDSRATRPRARVPTESPTRTSLGP 61


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 187 IATAPSNRDPCCRGKNSKTNGLVSNSHPPGQVPYLSLIN 71
           +A A   R PC R  +  TNGLV  + P    P + ++N
Sbjct: 561 VAVAQLGRLPCLRRLDLSTNGLV-GAFPASGFPAIEVVN 598


>12_02_0549 + 20323564-20323625,20323632-20323833
          Length = 87

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 413 VEHVAAIRGA-VCTILTKYHAITHRNRCLRLLT 318
           + H A ++ A +C +L K  A+T RNR  RL T
Sbjct: 50  LRHRALVKNAYLCHVLAKGRAVTLRNRQHRLFT 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,170
Number of Sequences: 37544
Number of extensions: 356438
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)