Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0159
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_786| Best HMM Match : EGF (HMM E-Value=0)                           29   1.8  
SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_19948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_3608| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -2

Query: 232  RYRPVREARQSDRCQIATAPSNRDPCCRGKNSKTNGLVSNSHPPGQVPYLSLINWQP 62
            R+ P+R   Q+ R Q  +AP  R P    K  +  GL  N    G    + L N QP
Sbjct: 942  RFGPIRPQYQAYR-QFVSAPYRRLPSLSWKQREMQGLGRNQVSYGMTGKIPLYNGQP 997


>SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 375 YFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISDDTQLSVDRQYTGTVPFEKQDKVT 196
           YF+     HSP   P  + AVSL+    G    ++   T+L+ D    G    EK+  V+
Sbjct: 18  YFSLNDIRHSPASSPKVTRAVSLQRISEG----KLKKKTKLATDLIVAGKSSSEKRGSVS 73


>SB_19948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 190 DICHFVLLLERDGTCILT 243
           D+C   +L++RDGTC LT
Sbjct: 11  DLCSSNILVKRDGTCALT 28


>SB_3608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
 Frame = -2

Query: 226 RPVREARQSDRCQIATAPSNR-----------DPCCRGKNSKTNGLVSNSHPPGQVPYLS 80
           + +R+A++  +C+I T+   R           DPC  G N +   +V  S P  + P + 
Sbjct: 42  KDLRDAKRKGQCKILTSEIKRNVTKNWHRRYMDPCRCGPNKRCLSVVVQSPPWTRQPSVE 101

Query: 79  LINWQPGQRCDRSFENRVPDQNLS 8
             +  PG +   +    V  QNL+
Sbjct: 102 QSSVPPGDQDGETNVRLVDTQNLT 125


>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 422 EVRVEHVAAI-RGAVCTILTKYHAITHRNRCLRLLTPCHLGR 300
           E+R E V+ +  G VC +L +Y   ++   C+R+L    L R
Sbjct: 265 EIRGEKVSFVFEGVVCAVLIRYGMQSNNKCCVRVLGLSALAR 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,361
Number of Sequences: 59808
Number of extensions: 369537
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)