Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0159
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.47 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 375 YFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISD 265
           Y+N I+    P P+P   H  +   + MG  WI I +
Sbjct: 333 YYNIINIEQIPVPVPVPIHCGNFPPRPMG-PWISIQE 368


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 223 PVREARQSDRCQIATAPSNRDPCCRGK 143
           P+R   + +R  +  A    D CC+G+
Sbjct: 327 PMRNDSERNRSPVRPATVQYDTCCQGR 353


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 207 DKVTDVKSRR--HRQIATRVAVVRIQKLTDWFR 115
           +K+T V+  +  H+ I     + R+Q++ DWFR
Sbjct: 32  EKITTVEEEKICHKAITP---LDRLQRVVDWFR 61


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 247 RPSIYRYRPVREARQSDRCQIATAPSNRDPCCRGKNSKTNGLVSNSHPPGQVP 89
           R SI +    R   ++ +C I     NR   CR K     G+  ++   G+VP
Sbjct: 92  RRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVP 144


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 277 KD*R*YTT*RRPSIYRYRPVREARQSDRCQIATAPSNR 164
           K+ R Y   R  S  R+R  RE  +S   +I ++ SN+
Sbjct: 284 KNEREYRKYRETSKERFRDRRERERSKESKIISSLSNK 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,914
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)