Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0159
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36675.1 68414.m04563 glycine-rich protein                          31   0.47 
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear...    29   1.4  
At1g65710.1 68414.m07458 expressed protein ; expression supporte...    29   1.9  
At2g25660.1 68415.m03075 expressed protein                             27   7.7  

>At1g36675.1 68414.m04563 glycine-rich protein 
          Length = 268

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 13  GSGRGLGSQTSGHNVVPAAS*LGTGRGPVRAGDCS 117
           G GRG+G    G  ++PAA  +G GRG    G  S
Sbjct: 213 GDGRGIGGGYRGRGIIPAAF-MGRGRGSGNHGQMS 246


>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
           antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
           15}
          Length = 118

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 10  RGSGRGLGSQTSGHNVVPAAS*LGTGRG 93
           RG GRG+G    G   +PAA  +G GRG
Sbjct: 64  RGDGRGIGGGGRGRGRIPAAF-MGRGRG 90


>At1g65710.1 68414.m07458 expressed protein ; expression supported
           by MPSS
          Length = 455

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 199 DRCQIATAPSNRDPCCRGKNSKTNGLVSNSHPPGQVPYLSLINWQPGQRCDRSFENRVPD 20
           D C+IA +P ++ P   G N  +    SNS    Q PY      +  Q   +  E+  P+
Sbjct: 255 DACRIAASPRSKSPARAGNNVPSLSR-SNSRKAEQSPYRRNPLGEIDQNTKKMIESVKPN 313

Query: 19  QNLSR 5
              SR
Sbjct: 314 SRTSR 318


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/92 (22%), Positives = 37/92 (40%)
 Frame = -3

Query: 375 YFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISDDTQLSVDRQYTGTVPFEKQDKVT 196
           YF+ +S     EP       +S    G+  + + +  D ++S   QY   VP+ +Q    
Sbjct: 394 YFHSLSQQKLDEPS-----VLSTNYDGLSLDMLLVKGDREIS--NQYDRHVPYGEQSLAN 446

Query: 195 DVKSRRHRQIATRVAVVRIQKLTDWFRTVTRP 100
           D+  + +R    R+  V+     D F     P
Sbjct: 447 DLDGKGYRVRGKRLLGVKKASTLDKFTVSCDP 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,238
Number of Sequences: 28952
Number of extensions: 256269
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)