Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0157
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    53   2e-08
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   1.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.3  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   4.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   4.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   4.0  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   5.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   6.9  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   6.9  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   9.1  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 27/41 (65%)
 Frame = +2

Query: 128 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAG 250
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQG 70



 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 256 MQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
           M  +RF  DG+ I  + TP  L+ME+GD IE   +Q GG
Sbjct: 73  MNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 250 SIMQVVRFRFDGQPINENDTPTSLEMEEGDTIEV 351
           S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 370 SFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 433  LILTHWRWSILKIIKFTLGTLLR 365
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +2

Query: 17  CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 172
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 173 NAIVQFKIKKHTPLRKLMNAYCDR 244
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 226 HQFPERCVFLYFELYNCV 173
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 193  FELYNCVILT*YFQINVFVFSLLFI 119
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 226 HQFPERCVFLYFELYNCV 173
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 72  SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 185
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 266 TTCIIDLLYHNKHSSI 219
           T C++DL+Y  KH+ I
Sbjct: 491 TPCMVDLIYRQKHARI 506


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  SIHSFVLIVSRTTLISKWLMKRREKTNTL 149
           +++ FV++V    L S W+M +  KT  L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 24  YAFVCENRYQISLSIHSFVLIVSRTTLISKWLMKRREKTN 143
           Y F   N +Q +LSI      +++ T I +W MK+  + N
Sbjct: 193 YRFNQRNNFQ-TLSIDEAEAKMNKKTPIPRWFMKKESEEN 231


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 245 LYHNKHSSIS*EVCVSLF*IVQLRY 171
           +Y   HS +  EVC+ L  ++Q RY
Sbjct: 713 VYQRGHSKVLVEVCICLDDVLQRRY 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,526
Number of Sequences: 5004
Number of extensions: 37461
Number of successful extensions: 85
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)