Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0157
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 55 4e-08
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 54 5e-08
07_03_0990 + 23173868-23174200 37 0.009
07_03_0989 + 23161020-23161412 37 0.009
07_03_0988 + 23160028-23160360 33 0.14
01_04_0034 + 15318509-15319567 33 0.14
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 29 2.3
01_01_0771 - 5982826-5983327,5983424-5984772 28 5.3
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 27 7.0
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 9.2
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/47 (61%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 119 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 244
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR 54
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 265 VRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
+ F FDG+ +N TP LEME+GD I+ QTGG
Sbjct: 62 IAFLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +2
Query: 128 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 244
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR 53
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 256 MQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
M + F FDG+ + TP LEME+GD I+ QTGG
Sbjct: 58 MNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
>07_03_0990 + 23173868-23174200
Length = 110
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 268 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 378
RF +DG+ ++ TP L+ME+GD ++ +++ GG +
Sbjct: 74 RFLYDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110
>07_03_0989 + 23161020-23161412
Length = 130
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 268 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 378
RF FDG+ + TP L+ME+GD + +++ GG +
Sbjct: 82 RFLFDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118
>07_03_0988 + 23160028-23160360
Length = 110
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 271 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
F FDG + + TP LEM +GDT++ + GG
Sbjct: 64 FLFDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 277 FDGQPINENDTPTSLEMEEGDTIEVYQQQTG 369
++G+ + ++ TP L++E+GDTI +Q G
Sbjct: 322 YEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 271 FRFDGQPINENDTPTSLEMEEGDTIEV 351
F FDG ++ TP L +E+ D +EV
Sbjct: 214 FAFDGDKVDAESTPEDLGLEDEDMVEV 240
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 312 WSVILIYWLPIKSESHYLHYRPALSQ*AFINFLRGVCFFIL 190
W V L+ WLP S + L +L AFI F GVC I+
Sbjct: 520 WGVPLVPWLPSLSIATNLFLMGSLGAQAFIRF--GVCTAIM 558
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 294 YWLPIKSESHYLHYRPALSQ*AFINFLRGVCFFILNCTIA 175
Y L + +E +YL Y + + L CF++ CT+A
Sbjct: 459 YHLVVSNELNYLSYGVGVGHWEMTSTLMLACFWLSRCTVA 498
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 294 YWLPIKSESHYLHYRPALSQ*AFINFLRGVCFFI 193
YW+P + YL+Y S+ +F++G+ FFI
Sbjct: 1125 YWVPDQDSKFYLNYGAGTSE-IEGSFIQGIGFFI 1157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,355
Number of Sequences: 37544
Number of extensions: 215739
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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