Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0157
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    29   3.1  
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 41  KQIPNQFVNSQFCINS-F*NHINLKMADEKKGENEHINLKVLGQDNAIVQFKIKKH 205
           K   NQ  + Q CI   F    NLK+AD+  G +  +  KV     A VQ  +K++
Sbjct: 201 KYYENQISSDQTCIKEWFETEENLKIADDSVGISFQLFFKVRELVEAEVQMDLKQY 256


>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 NLKMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 244
           ++K +DE+ GE E +  K  G+D A     +K+  P + L +   DR
Sbjct: 33  DVKASDEEAGEEEDVEAKDNGEDGASDTI-VKEKKPCKSLSDLQDDR 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,503
Number of Sequences: 59808
Number of extensions: 270461
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)