Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0157
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO) ...    57   6e-09
At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical...    56   2e-08
At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO) ...    47   9e-06
At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO) ...    35   0.039
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-...    34   0.051
At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351 ...    34   0.067
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ...    28   4.4  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   5.8  

>At5g55160.1 68418.m06877 small ubiquitin-like modifier 2 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852 from
           [Arabidopsis thaliana]; identical to cDNA small
           ubiquitin-like modifier 2 (SUMO)  GI:22652843; contains
           Pfam profile PF00240: Ubiquitin family
          Length = 103

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +2

Query: 119 DEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 244
           D+K  +  HINLKV GQD   V F+IK+ T L+KLMNAYCDR
Sbjct: 8   DKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR 49



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 265 VRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
           + F FDG+ +    TP  LEME+GD I+    QTGG
Sbjct: 57  IAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 92


>At4g26840.1 68417.m03864 ubiquitin-like protein (SMT3) identical to
           Ubiquitin-like protein SMT3 SP:P55852 from[Arabidopsis
           thaliana]; identical to cDNA SMT3 protein GI:1707371
          Length = 100

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +2

Query: 119 DEKKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 244
           D+K G+   HINLKV GQD   V F+IK+ T L+KLMNAYCDR
Sbjct: 8   DKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR 50



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 MQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
           M  + F FDG+ +    TP  L+ME+GD I+    QTGG
Sbjct: 55  MNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93


>At5g55170.1 68418.m06878 small ubiquitin-like modifier 3 (SUMO)
           similar to SP|O13351 Ubiquitin-like protein smt3/pmt3
           {Schizosaccharomyces pombe}; identical to cDNA small
           ubiquitin-like modifier 3 (SUMO) GI:22652845
          Length = 111

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 22/40 (55%), Positives = 25/40 (62%)
 Frame = +2

Query: 134 ENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGL 253
           +  H+ LKV  QD   V FK KK  PL+KLM  YCDR GL
Sbjct: 14  QEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGL 53



 Score = 33.5 bits (73), Expect = 0.089
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 271 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGV 375
           F F+G  I   +TP  L+ME+GD I+  +  +GG+
Sbjct: 60  FIFNGARIGGLETPDELDMEDGDVIDACRAMSGGL 94


>At2g32765.1 68415.m04009 small ubiquitin-like modifier 5 (SUMO)
           similar to ubiquitin-like protein SMT3 SP:P55852
           [Arabidopsis thaliana]; contains INTERPRO:IPR000626
           ubiquitin domain; contains Pfam profile PF00240:
           Ubiquitin family; contains Pfam profile PF00240:
           Ubiquitin family;  identical to cDNA small
           ubiquitin-like modifier 5 (SUMO) mRNA GI:22652847
          Length = 108

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 101 INLKMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGL 253
           ++ K    +   +  + LKV  Q  A   +KI  H  L+KLM+AYC +  L
Sbjct: 13  VSKKSRSPETSPHMKVTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNL 63



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 265 VRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
           VRF ++G+ I    TP  L MEE D I +  +  GG
Sbjct: 68  VRFVYNGREIKARQTPAQLHMEEEDEICMVMELGGG 103


>At1g68185.1 68414.m07789 ubiquitin-related similar to
           ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
           yeast]
          Length = 215

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 271 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQT 366
           F FDG  I+ + TP+ L ME+ D IEV+ ++T
Sbjct: 184 FIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215


>At5g48710.1 68418.m06029 ubiquitin-related similar to SP|O13351
           Ubiquitin-like protein smt3/pmt3 {Schizosaccharomyces
           pombe}
          Length = 114

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 268 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 372
           RF FDG  I E  TP  LE ++GD I+    Q  G
Sbjct: 70  RFLFDGSRIREYHTPDELERKDGDEIDAMLCQQSG 104


>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 597

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 1   RHEHKLSFTRSFVKTD-TKSVCQFTV 75
           RH+H++SFT SF + D +  VC+ T+
Sbjct: 466 RHQHRISFTTSFDEGDWSCGVCRKTI 491


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 1   RHEHKLSFTRSFVKTD-TKSVCQ 66
           RH H++SFT SF K D +  VC+
Sbjct: 329 RHHHRISFTHSFEKGDWSCGVCR 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,418
Number of Sequences: 28952
Number of extensions: 187189
Number of successful extensions: 397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)