Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0155
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    69   8e-13
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    30   0.35 
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   2.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   10.0 

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 26/46 (56%), Positives = 37/46 (80%)
 Frame = +1

Query: 10  AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 147
           AFLQQFH+G+ Y++LKL+EQE RN+ WI+EC++Q  R +  N +PI
Sbjct: 297 AFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDRALNIVPI 342


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 1   RHEAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIP 144
           RHE     FH+G   S L     + RNIV+I+ C+ +     +  ++P
Sbjct: 660 RHE--FVDFHYGYMVSILSKLIADDRNIVYIASCLEEDELESLFMHVP 705


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +1

Query: 31  FGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 147
           F + +S+LK +  + + IV++S C + K+ A++ NYI +
Sbjct: 324 FLLLFSFLK-RNLKKKVIVFMSSCASVKYMAELLNYIDL 361


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 382 SLLSCCQAFLKSIATSIFKCLLSPCTDIKFFYFNVW 275
           SLL+C QAFL ++A  ++  L    +D       VW
Sbjct: 322 SLLTCGQAFLVNVAPMVYPLLYISGSDKACVLRMVW 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,788
Number of Sequences: 5004
Number of extensions: 51691
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)