Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0155
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537...    62   3e-10
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587...    28   7.8  

>01_05_0512 -
           22852009-22852140,22852686-22852820,22853739-22853787,
           22854043-22854128,22854211-22854291,22854394-22854496,
           22854577-22854684,22854799-22854919,22855532-22855712
          Length = 331

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 25/48 (52%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
 Frame = +1

Query: 10  AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 150
           +F QQFH+ VF++Y++L+EQE RN++WISECVAQ  + ++ D+ + IF
Sbjct: 284 SFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVHDSVVFIF 331


>05_03_0443 +
           14057080-14057201,14058566-14058698,14058758-14058797,
           14059175-14059398,14059904-14059976,14060364-14060614,
           14060892-14061060,14061307-14061611,14062023-14062209,
           14062311-14062464,14063186-14063248,14063337-14063433,
           14063530-14063619
          Length = 635

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +2

Query: 8   RLSCNNSILEFSILI*N*RNRSAVTLFGSVNAWPRNIVPKSTTTFQSSNYS*NNVCSILS 187
           R    NS+LE+SIL+ +  NRS    F    A P    P S     SS +S   V  I  
Sbjct: 553 RYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRP 612

Query: 188 L 190
           L
Sbjct: 613 L 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,995
Number of Sequences: 37544
Number of extensions: 288169
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)