Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0155
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...    87   1e-17

>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 33/46 (71%), Positives = 43/46 (93%)
 Frame = +1

Query: 10  AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 147
           ++L QFHFGVFY+++KLKEQE RNI+WI+EC++Q+HR KIDNYIPI
Sbjct: 302 SYLHQFHFGVFYAFIKLKEQEMRNIIWIAECISQRHRTKIDNYIPI 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,828
Number of Sequences: 27780
Number of extensions: 292213
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)