Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0155
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta...    64   6e-11
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...    64   6e-11
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p...    29   2.8  

>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = +1

Query: 10  AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 150
           AF QQFH+ VF++Y++L+EQE RN++WISECVAQ  +++I D+ + +F
Sbjct: 304 AFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = +1

Query: 10  AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 150
           AF QQFH+ VF++Y++L+EQE RN++WISECVAQ  +++I D+ + +F
Sbjct: 304 AFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351


>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 553

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 312 HALISNFSISMSGGTEWW--HVAW*PCLYAAIKKVVIWFPTM 193
           H+ + NF+++   GT WW  HV W   L A +   ++  P +
Sbjct: 107 HSYVYNFTVTGQRGTLWWHAHVLW---LRATVHGAIVILPKL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,512
Number of Sequences: 28952
Number of extensions: 250586
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)