Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0154
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 124 2e-29
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 97 3e-21
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 97 3e-21
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 30 0.28
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 30 0.36
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 28 1.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 1.9
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 124 bits (298), Expect = 2e-29
Identities = 60/73 (82%), Positives = 67/73 (91%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITP
Sbjct: 63 GLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITP 122
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 123 RHLQLAIRGDEEL 135
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLI 320
+D+LI+ATIAGGGV+PHI+K L+
Sbjct: 135 LDTLIRATIAGGGVLPHINKQLL 157
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 96.7 bits (230), Expect = 3e-21
Identities = 50/84 (59%), Positives = 61/84 (72%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GL FPVGR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI P
Sbjct: 24 GLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIP 82
Query: 217 RHLQLAIRGDEELTAS*KQLSLAE 288
RHLQLAIR DEEL +++A+
Sbjct: 83 RHLQLAIRNDEELNKLLGHVTIAQ 106
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGG 335
TIA GGV+P+I+ L+ K G
Sbjct: 103 TIAQGGVVPNINAHLLPKTSG 123
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 96.7 bits (230), Expect = 3e-21
Identities = 50/84 (59%), Positives = 61/84 (72%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GL FPVGR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI P
Sbjct: 24 GLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIP 82
Query: 217 RHLQLAIRGDEELTAS*KQLSLAE 288
RHLQLAIR DEEL +++A+
Sbjct: 83 RHLQLAIRNDEELNKLLGHVTIAQ 106
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGAP 347
TIA GGV+P+I+ L+ K+ G G P
Sbjct: 103 TIAQGGVVPNINAHLLPKQSGKGKP 127
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 132 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 236
+Y G +YS G V GKCV +F + + +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 43 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 222
+FPV RI + + G+V V + LE +++ + ++ + KR+T H
Sbjct: 23 RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81
Query: 223 LQLAIRGDEE 252
L+ A++ E+
Sbjct: 82 LKHAVQSVEQ 91
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -3
Query: 582 SLILIQSYFKSPYSLHISITYSYILVRTNSSSHTTVHFTNIILIENYVNQSGR*FVQVC 406
+L + ++ K S ++ + YI+ R + +SH + F++I+ I V + G F+++C
Sbjct: 119 TLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQIN--VFKLGSTFLKLC 175
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 245 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 69
SPL CKC G IR+ + L + +SK + K E T + + P + + C
Sbjct: 19 SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,826
Number of Sequences: 5004
Number of extensions: 56650
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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