Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0154
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0433 + 3353255-3353374,3353532-3353828 140 7e-34
10_08_0018 + 14164103-14164225,14164596-14164892 135 3e-32
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 132 2e-31
12_02_0151 - 14468480-14468698,14468902-14469090 97 9e-21
07_03_0790 + 21536389-21536577,21536854-21537072 97 9e-21
07_03_0791 + 21539069-21539257,21539493-21539711 97 1e-20
12_02_0605 - 20924385-20924606,20924705-20924899 96 2e-20
03_05_0949 + 29089293-29089487,29089592-29089810 96 2e-20
05_05_0119 - 22512228-22512500,22512577-22512795 94 1e-19
03_02_0562 - 9469263-9469517,9469619-9469843 93 3e-19
05_01_0107 + 706936-707202,707231-707485 76 3e-14
08_02_0735 + 20564451-20564525,20566346-20566561 55 6e-08
12_02_0680 + 21903520-21904093,21904474-21905162 31 1.2
09_02_0555 - 10588685-10592038 29 2.7
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 8.1
08_01_0775 - 7531397-7531564,7531590-7532771 28 8.1
>03_01_0433 + 3353255-3353374,3353532-3353828
Length = 138
Score = 140 bits (340), Expect = 7e-34
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRIHR LK+R ++HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 38 GLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 97
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 98 RHLQLAIRGDEEL 110
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSLI K
Sbjct: 110 LDTLIKGTIAGGGVIPHIHKSLINK 134
>10_08_0018 + 14164103-14164225,14164596-14164892
Length = 139
Score = 135 bits (327), Expect = 3e-32
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G+QFPVGRIHR LK R +++GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 39 GIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITP 98
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 99 RHLQLAIRGDEEL 111
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSLI K
Sbjct: 111 LDTLIKGTIAGGGVIPHIHKSLINK 135
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 132 bits (320), Expect = 2e-31
Identities = 65/70 (92%), Positives = 67/70 (95%)
Frame = +1
Query: 46 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 225
FPVGRIHR LK RT ++GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 65 FPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 124
Query: 226 QLAIRGDEEL 255
QLAIRGDEEL
Sbjct: 125 QLAIRGDEEL 134
>12_02_0151 - 14468480-14468698,14468902-14469090
Length = 135
Score = 97.5 bits (232), Expect = 9e-21
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEELT
Sbjct: 83 RHIQLAVRNDEELT 96
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 270 ATIAGGGVIPHIHKSLIGKKGG 335
ATIA GGV+P+IH+ L+ KK G
Sbjct: 102 ATIASGGVMPNIHQHLLPKKAG 123
>07_03_0790 + 21536389-21536577,21536854-21537072
Length = 135
Score = 97.5 bits (232), Expect = 9e-21
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEELT
Sbjct: 83 RHIQLAVRNDEELT 96
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 270 ATIAGGGVIPHIHKSLIGKKGG 335
ATIA GGV+P+IH+ L+ KK G
Sbjct: 102 ATIASGGVMPNIHQHLLPKKAG 123
>07_03_0791 + 21539069-21539257,21539493-21539711
Length = 135
Score = 97.1 bits (231), Expect = 1e-20
Identities = 56/100 (56%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELTAS*KQLSLAEAS-SHTYTNLSLERKA 333
RH+QLA+R DEEL+ +++A NL L +KA
Sbjct: 83 RHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGA 344
TIA GGV+P+IH L+ KK G A
Sbjct: 103 TIASGGVMPNIHNLLLPKKAGGSA 126
>12_02_0605 - 20924385-20924606,20924705-20924899
Length = 138
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI P
Sbjct: 26 GLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVP 84
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 85 RHIQLAVRNDEELS 98
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGG 335
TIA GGV+P+IH++L+ KKGG
Sbjct: 105 TIAAGGVLPNIHQTLLPKKGG 125
>03_05_0949 + 29089293-29089487,29089592-29089810
Length = 137
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI P
Sbjct: 26 GLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVP 84
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 85 RHIQLAVRNDEELS 98
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGG 335
TIA GGV+P+I + L+ KKGG
Sbjct: 105 TIAAGGVLPNIQQVLLPKKGG 125
>05_05_0119 - 22512228-22512500,22512577-22512795
Length = 163
Score = 93.9 bits (223), Expect = 1e-19
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK S R+G A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 34 GLQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 92
Query: 217 RHLQLAIRGDEEL 255
RH+ LAIR DEEL
Sbjct: 93 RHVLLAIRNDEEL 105
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 261 LIKATIAGGGVIPHIHKSLIGKKGGPGA 344
L TIA GGV+P+I+ L+ KK G A
Sbjct: 109 LAGVTIAHGGVLPNINPVLLPKKTGSAA 136
>03_02_0562 - 9469263-9469517,9469619-9469843
Length = 159
Score = 92.7 bits (220), Expect = 3e-19
Identities = 48/73 (65%), Positives = 55/73 (75%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK + R+G A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 36 GLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 94
Query: 217 RHLQLAIRGDEEL 255
RH+ LAIR DEEL
Sbjct: 95 RHVLLAIRNDEEL 107
>05_01_0107 + 706936-707202,707231-707485
Length = 173
Score = 75.8 bits (178), Expect = 3e-14
Identities = 49/90 (54%), Positives = 55/90 (61%), Gaps = 17/90 (18%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAE-----------------VL 165
GLQFPVGRI R+LK + RVG A VY AA+LEYL AE VL
Sbjct: 33 GLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEASHCLSLPLPNPSKPSMVL 91
Query: 166 ELAGNASKDLKVKRITPRHLQLAIRGDEEL 255
ELAGNA++D K RI PRH+ LAIR DEEL
Sbjct: 92 ELAGNAARDNKKNRIIPRHVLLAIRNDEEL 121
>08_02_0735 + 20564451-20564525,20566346-20566561
Length = 96
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +1
Query: 148 LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELTAS*KQLSLAEAS-SHTYTNLSLE 324
L+ +VLELAGNA++D K RI PRH+QLA+R DEEL+ +++A NL L
Sbjct: 22 LSIKVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLP 81
Query: 325 RKA 333
+KA
Sbjct: 82 KKA 84
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGA 344
TIA GGV+P+IH L+ KK G A
Sbjct: 65 TIANGGVMPNIHNLLLPKKAGSSA 88
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 73 LKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR-HLQLAIRGDE 249
L +R +SHG A Y A + L GNA + + +TP HL + R D
Sbjct: 52 LHHRGSSHGESRGIRATYPQARYPPMVRLAARLWGNAEAEAGYRVLTPTPHLDMGPRADP 111
Query: 250 ELTAS*KQLSLAE 288
L A+ + AE
Sbjct: 112 ALRAAIQNGGAAE 124
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 630 TSYIQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 511
T + +N C + ++L +++Q +SPYS+H T Y+
Sbjct: 668 TLWNENRVCVPDNRELKQLILQEAHESPYSIHSGSTKMYL 707
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 549 PYSLHISITYSYILVRTNSSSHTTVHFTNI 460
P SL +S++ S L+ S H TV F N+
Sbjct: 81 PLSLSLSLSLSLSLISPQISLHATVRFANV 110
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 618 QNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 511
+N C + ++L +++Q +SPYS+H T Y+
Sbjct: 351 ENRVCVPDDRELKQLILQEAHESPYSIHPGSTKMYL 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,247,565
Number of Sequences: 37544
Number of extensions: 375634
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -