Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0154
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.8  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   8.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 209 IRFTFKSLDAFPANSKTSAVRYSKIAAE*TAAVAPTRPW 93
           I+FT +    FP N+ +    +S +  E   A     PW
Sbjct: 90  IKFTTRDCSLFPGNALSCKETFSLLYYEFDVATKEPPPW 128


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +1

Query: 298 HTYTNLSLERKAVLVHPFNFKL*DDKIILHLIPAVVTHLHKSSPRLVNIVFY*NNISEVD 477
           H YTNL+  RK  ++   NF +   +I+   + AVV    + +  L+      N I ++ 
Sbjct: 463 HLYTNLTALRKRDVLKKGNFTI---EILNKTVLAVVRQSEEEAVSLLINFSKNNTIVDIS 519

Query: 478 SGVTGTVGPD*YVAISNRNM 537
             V        Y +  N N+
Sbjct: 520 KLVNKRNNAKIYTSSVNSNL 539


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 585 LSLILIQSYFKSP 547
           LS+ILI SYF +P
Sbjct: 12  LSVILITSYFVTP 24


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 585 LSLILIQSYFKSP 547
           LS+ILI SYF +P
Sbjct: 12  LSVILITSYFVTP 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,924
Number of Sequences: 438
Number of extensions: 4291
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)