Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0154
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 138 4e-33
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 137 7e-33
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 137 7e-33
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 137 7e-33
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 137 7e-33
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 109 1e-24
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 98 4e-21
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 97 7e-21
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 97 7e-21
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 97 1e-20
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 96 2e-20
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 95 5e-20
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 95 5e-20
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 92 3e-19
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 91 5e-19
At4g19980.1 68417.m02925 expressed protein ; expression support... 30 1.3
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 29 2.9
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 29 2.9
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 29 3.9
At3g57880.1 68416.m06452 C2 domain-containing protein contains I... 28 5.1
At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi... 28 5.1
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 5.1
At5g16660.1 68418.m01950 expressed protein 28 6.8
At5g61690.1 68418.m07740 ABC transporter family protein ABC tran... 27 9.0
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 138 bits (333), Expect = 4e-33
Identities = 66/73 (90%), Positives = 71/73 (97%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI+P
Sbjct: 34 GLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISP 93
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 94 RHLQLAIRGDEEL 106
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSLI K
Sbjct: 106 LDTLIKGTIAGGGVIPHIHKSLINK 130
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 137 bits (331), Expect = 7e-33
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 36 GIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITP 95
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 96 RHLQLAIRGDEEL 108
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSLI K
Sbjct: 108 LDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 137 bits (331), Expect = 7e-33
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 36 GIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITP 95
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 96 RHLQLAIRGDEEL 108
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 108 LDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 137 bits (331), Expect = 7e-33
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 36 GIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITP 95
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 96 RHLQLAIRGDEEL 108
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 108 LDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 137 bits (331), Expect = 7e-33
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITP
Sbjct: 36 GIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITP 95
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 96 RHLQLAIRGDEEL 108
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIHKSLIGK 326
+D+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 108 LDTLIKGTIAGGGVIPHIHKSLVNK 132
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 109 bits (263), Expect = 1e-24
Identities = 53/73 (72%), Positives = 58/73 (79%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
G F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKDLKVKRITP
Sbjct: 28 GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITP 87
Query: 217 RHLQLAIRGDEEL 255
RHLQLAIRGDEEL
Sbjct: 88 RHLQLAIRGDEEL 100
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 252 IDSLIKATIAGGGVIPHIH 308
+D+LIK TI GG VIPHIH
Sbjct: 100 LDTLIKGTIIGGSVIPHIH 118
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 98.3 bits (234), Expect = 4e-21
Identities = 51/74 (68%), Positives = 58/74 (78%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 83 RHIQLAVRNDEELS 96
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGAP 347
TIA GGV+P+IH L+ KK G P
Sbjct: 103 TIANGGVMPNIHSLLLPKKAGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 97.5 bits (232), Expect = 7e-21
Identities = 56/100 (56%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELTAS*KQLSLAEAS-SHTYTNLSLERKA 333
RH+QLA+R DEEL+ +++A NL L +KA
Sbjct: 83 RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGAP 347
TIA GGV+P+IH L+ KK G P
Sbjct: 103 TIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 97.5 bits (232), Expect = 7e-21
Identities = 56/100 (56%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELTAS*KQLSLAEAS-SHTYTNLSLERKA 333
RH+QLA+R DEEL+ +++A NL L +KA
Sbjct: 83 RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGAP 347
TIA GGV+P+IH L+ KK G P
Sbjct: 103 TIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 96.7 bits (230), Expect = 1e-20
Identities = 50/74 (67%), Positives = 57/74 (77%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 24 GLQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 83 RHIQLAVRNDEELS 96
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGGPGAP 347
TIA GGV+P+IH L+ KK G P
Sbjct: 103 TIANGGVMPNIHNLLLPKKTGASKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 95.9 bits (228), Expect = 2e-20
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++D K RI P
Sbjct: 30 GLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 89 RHIQLAVRNDEELS 102
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGG 335
TIA GGV+P+IH++L+ K G
Sbjct: 109 TIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 94.7 bits (225), Expect = 5e-20
Identities = 51/83 (61%), Positives = 60/83 (72%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 32 GLQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 90
Query: 217 RHLQLAIRGDEELTAS*KQLSLA 285
RH+ LA+R DEEL K +++A
Sbjct: 91 RHVLLAVRNDEELGTLLKGVTIA 113
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 94.7 bits (225), Expect = 5e-20
Identities = 49/74 (66%), Positives = 57/74 (77%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI P
Sbjct: 30 GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88
Query: 217 RHLQLAIRGDEELT 258
RH+QLA+R DEEL+
Sbjct: 89 RHIQLAVRNDEELS 102
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 273 TIAGGGVIPHIHKSLIGKKGG 335
TIA GGV+P+IH++L+ K G
Sbjct: 109 TIANGGVLPNIHQTLLPSKVG 129
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 92.3 bits (219), Expect = 3e-19
Identities = 49/73 (67%), Positives = 54/73 (73%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 32 GLQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIP 90
Query: 217 RHLQLAIRGDEEL 255
RHL LAIR DEEL
Sbjct: 91 RHLLLAIRNDEEL 103
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 91.5 bits (217), Expect = 5e-19
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +1
Query: 37 GLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 216
GLQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++D K RI P
Sbjct: 33 GLQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINP 91
Query: 217 RHLQLAIRGDEEL 255
RHL LAIR DEEL
Sbjct: 92 RHLCLAIRNDEEL 104
>At4g19980.1 68417.m02925 expressed protein ; expression supported
by MPSS
Length = 127
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +3
Query: 105 RSYGSSLFCRYFGISYSRGFGVGGKCV*RFKSEAYY 212
R GSSL CRY +SYS F GG C E YY
Sbjct: 57 RRQGSSLQCRYDPMSYSLNFD-GGACGTLPDDEDYY 91
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +2
Query: 272 NYRWRRRHPTH--TQISH 319
N+RWR RHP H T++SH
Sbjct: 628 NFRWRPRHPPHMDTRLSH 645
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 58 RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 219
R+ RH HG GA AAI +YL +V + D +R+ R
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFDVYNITQGVKTDFDTRRLIRR 246
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 347 GCTRTAFLSNERFVYVW-DDASASDSCFYEAVNSSSP 240
GC++ ++ + RFV W DD +S S F E + +P
Sbjct: 16 GCSQDSYYNETRFVESWHDDGYSSSSDFEEEPDGGAP 52
>At3g57880.1 68416.m06452 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 773
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +2
Query: 275 YRWRRRHPTH--TQISH 319
YRWR RHP H T++SH
Sbjct: 633 YRWRPRHPPHMDTRLSH 649
>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1077
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 100 RVGATAAVY---SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 228
++G VY S IL +L A +L ++ NAS++L V RI+ + Q
Sbjct: 483 KIGRLVEVYVYGSWQILAFLAAVLLLISQNASRNLAVTRISKKKTQ 528
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +2
Query: 275 YRWRRRHPTH--TQISH 319
YRWR RHP H T++SH
Sbjct: 636 YRWRPRHPPHMDTRLSH 652
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 419 LCRCVTTAGIKCSIILSSHNLKLNGCTRTAFLSN 318
+ C+ TA + S + SH +K NG + T LS+
Sbjct: 1 MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSS 34
>At5g61690.1 68418.m07740 ABC transporter family protein ABC
transport protein, Dictyostelium discoideum, PIR:T18288
Length = 954
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -3
Query: 672 VRAVNYNDTAMHIPTSYIQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYIL---VR 502
V A+ N+ IPT+ +Q+FK P ++ L+ + P +LH + ++ V+
Sbjct: 107 VSAIMANNPGRPIPTNKVQSFKEP---DEVDTWLLSHPLQVPGALHFVERNASVISYGVQ 163
Query: 501 TNSSSHT 481
TNSSS +
Sbjct: 164 TNSSSES 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,010
Number of Sequences: 28952
Number of extensions: 302503
Number of successful extensions: 667
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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