Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0153
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 27 3.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 27 3.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 27 3.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 27 3.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 40 KLY*PYVFDFYNTRKNYMSVRKSLKYGLNYNDYV 141
KLY Y+ +F R + + ++K LN NDYV
Sbjct: 554 KLYNLYLVEFKAGRADVFYIDDNIKLSLNLNDYV 587
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 582 CGLNS*LCRSFMIIILGYSFSKFFKFVVINFG 487
C L L S +I GY F+ F F VIN+G
Sbjct: 270 CVLVQSLILSLFLISFGYFFTFFAVFSVINYG 301
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 582 CGLNS*LCRSFMIIILGYSFSKFFKFVVINFG 487
C L L S +I GY F+ F F VIN+G
Sbjct: 270 CVLVQSLILSLFLISFGYFFTFFAVFSVINYG 301
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 582 CGLNS*LCRSFMIIILGYSFSKFFKFVVINFG 487
C L L S +I GY F+ F F VIN+G
Sbjct: 270 CVLVQSLILSLFLISFGYFFTFFAVFSVINYG 301
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 582 CGLNS*LCRSFMIIILGYSFSKFFKFVVINFG 487
C L L S +I GY F+ F F VIN+G
Sbjct: 270 CVLVQSLILSLFLISFGYFFTFFAVFSVINYG 301
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 VNFGNRYSDMXNKRTESTRSKLSXIIQCSCTT--DFWVQH 397
+ F Y + +TE T + +++C C+T + WV H
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDH 1110
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -3
Query: 159 IMKDRRNVIVIIESIFKTLPDGHIVFTSIIKIENIRSI 46
++K+RRNV+ + + TLP I F++I+ + + I
Sbjct: 1616 VVKERRNVLNSLCTEIMTLPGNVISFSNILMLVVLHKI 1653
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 209 LHLPVLGIQNL*KNVIYF*FDSGAHVNFGNRYSDMXNKRTESTRSK 346
LHL + IQ +N I G+HV N+YS+M T S+
Sbjct: 427 LHLEISKIQKKYQNQIEN-MKKGSHVTKSNQYSEMIGNLPYPTSSR 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,067
Number of Sequences: 5004
Number of extensions: 50917
Number of successful extensions: 95
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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