Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0153
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0712 + 13200174-13200761,13201966-13202616                       31   0.86 
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    29   2.6  
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    28   6.1  
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    28   8.0  

>02_02_0712 + 13200174-13200761,13201966-13202616
          Length = 412

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 196 QHYLPTFAGVRHP 234
           +HYLPTF G+RHP
Sbjct: 320 EHYLPTFLGIRHP 332


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 434 NEVSQLL*ITCDRKNYS---YPKLITTNLKNFEKLYPRIIIIKD 556
           NE S+LL I C   N +   YPK +   + +  K YPR++++ D
Sbjct: 212 NEKSRLL-ILCSPSNPTGSVYPKELLEEIADIVKKYPRLLVLSD 254


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 388 PKVCCTRALNYXA*FGSCALGSLVXHITVTISKINVCTTVKLEIYYIFSKILDA 227
           P +C    + Y    G   LGS+V   T ++  +   TTVK E    FSKIL+A
Sbjct: 148 PALCRKMEIPYCIVKGKARLGSIVHKKTASVLCL---TTVKNEDKLEFSKILEA 198


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 388 PKVCCTRALNYXA*FGSCALGSLVXHITVTISKINVCTTVKLEIYYIFSKILDA 227
           P +C    + Y    G   LGS+V   T ++  +   TTVK E    FSKIL+A
Sbjct: 163 PALCRKMEVPYCIVKGKARLGSIVHKKTASVLCL---TTVKNEDKLEFSKILEA 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,605
Number of Sequences: 37544
Number of extensions: 263167
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)