Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0153
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              29   3.6  
SB_23089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   6.2  
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)          28   8.2  
SB_2548| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 407 FSVNVAPKSLLYKSIELXSLVWILCSRFACYXY 309
           F VN   + LLY S+ +  L  +L   +ACY Y
Sbjct: 632 FEVNTINEILLYTSVAVSLLNLVLLMAYACYHY 664


>SB_23089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 401 VNVAPKSLLYKSIELXSLVWILCSRFACYXYHC 303
           VN   + LLY S+ +  L ++L   +ACY +HC
Sbjct: 336 VNTINEILLYASVAVSLLNFVLLMAYACY-HHC 367


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 422  NYPVFFSVNVAPKSLLY---KSIELXSLVWILCSRFACYXY-HCNDFQN 288
            +YP    V+    SLLY     I + +LV  +CS+  C+ Y  CN+  N
Sbjct: 1483 SYPTTHYVDFKDSSLLYILYPMITVIALVADVCSKVTCHRYAKCNNHYN 1531


>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
          Length = 439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 482 SYPKLITTNLKNFEKLYPRIIIIKD 556
           S PK +  NLK F K YPR ++  D
Sbjct: 109 SLPKQLDANLKEFFKKYPRKVLQND 133


>SB_2548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 67  FYNTRKNYMSVRKSLKYGLNYNDYVPSILHNLMLNRCLS*SSLQHYLPTFA-GVRHPKSL 243
           FY  +    +VR++++ G+N  D+ P   HNL+    +S     +    FA  VR P   
Sbjct: 142 FYFNQDEVKAVREAVEEGVNVTDF-PVCEHNLICRVGVSRGQFSNGRVYFACDVRPPN-- 198

Query: 244 KKCNIFL 264
           KKC+ F+
Sbjct: 199 KKCDRFV 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,364
Number of Sequences: 59808
Number of extensions: 357519
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)