Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0152
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   2.6  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    27   3.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   8.0  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 505 LAIQTLEPVVLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
           L++Q   P  LEL+  D+D M+L   +   +   ++ LV N
Sbjct: 86  LSLQVRPPTTLELSFTDVD-MFLKYHREKNVLNSLEALVQN 125


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 529 VVLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
           + L+ +++  D +   +EKV    G +D+L+NN
Sbjct: 48  LALQADVSKADQIETAIEKVIQTLGPIDVLINN 80


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 203 AKLITFCLKTARVDIPTSSQFQFIAN 126
           +KL+ FCL+    D+P   Q   + N
Sbjct: 136 SKLLIFCLRILPADLPNDHQCHILVN 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,667
Number of Sequences: 5004
Number of extensions: 65448
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)