Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0152
(704 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF145631-1|AAD38606.1| 326|Drosophila melanogaster BcDNA.GH0602... 37 0.023
AE014297-4424|AAF56927.1| 326|Drosophila melanogaster CG7601-PA... 37 0.023
BT014637-1|AAT27261.1| 237|Drosophila melanogaster RH36352p pro... 29 8.1
BT011176-1|AAR88537.1| 247|Drosophila melanogaster RH03309p pro... 29 8.1
AE014298-3228|EAL24570.1| 231|Drosophila melanogaster CG40485-P... 29 8.1
AE014298-3227|EAL24569.1| 247|Drosophila melanogaster CG40485-P... 29 8.1
>AF145631-1|AAD38606.1| 326|Drosophila melanogaster BcDNA.GH06026
protein.
Length = 326
Score = 37.1 bits (82), Expect = 0.023
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 526 PVVLELNLADIDNMYLFVEKVYGICGHVDILVNNG 630
P VL L+LA+++++ FV +V + VDIL+NNG
Sbjct: 108 PTVLPLDLAELNSIPEFVTRVLAVYNQVDILINNG 142
>AE014297-4424|AAF56927.1| 326|Drosophila melanogaster CG7601-PA
protein.
Length = 326
Score = 37.1 bits (82), Expect = 0.023
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 526 PVVLELNLADIDNMYLFVEKVYGICGHVDILVNNG 630
P VL L+LA+++++ FV +V + VDIL+NNG
Sbjct: 108 PTVLPLDLAELNSIPEFVTRVLAVYNQVDILINNG 142
>BT014637-1|AAT27261.1| 237|Drosophila melanogaster RH36352p
protein.
Length = 237
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 532 VLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
+++ +++D+ ++ + V G G+VDIL+NN
Sbjct: 66 IMQCDVSDVSSVNAVFDAVQGDLGNVDILINN 97
>BT011176-1|AAR88537.1| 247|Drosophila melanogaster RH03309p
protein.
Length = 247
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 532 VLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
+++ +++D+ ++ + V G G+VDIL+NN
Sbjct: 60 IMQCDVSDVSSVNAVFDAVQGDLGNVDILINN 91
>AE014298-3228|EAL24570.1| 231|Drosophila melanogaster CG40485-PA,
isoform A protein.
Length = 231
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 532 VLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
+++ +++D+ ++ + V G G+VDIL+NN
Sbjct: 60 IMQCDVSDVSSVNAVFDAVQGDLGNVDILINN 91
>AE014298-3227|EAL24569.1| 247|Drosophila melanogaster CG40485-PB,
isoform B protein.
Length = 247
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 532 VLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
+++ +++D+ ++ + V G G+VDIL+NN
Sbjct: 60 IMQCDVSDVSSVNAVFDAVQGDLGNVDILINN 91
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,427,464
Number of Sequences: 53049
Number of extensions: 671741
Number of successful extensions: 1181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -