Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0152
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.92 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  QHASDYTEFNCITHLALFCSSNSL 113
           +HA    E+ C+    ++CS NSL
Sbjct: 28  KHAERQEEYRCVICERVYCSRNSL 51


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 529 VVLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
           V L+ +L++ +++   +E V    G +DIL+NN
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINN 91


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 225 ITQVFIGIKGDENPAHLMVSSRRHLW 302
           + +VF+G K D     + +S  +HL+
Sbjct: 534 VVRVFLGPKHDHQGRPISISKNQHLF 559


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 233 LCYKNYIYVPAKLITFCLKTARVDI 159
           LC  +Y+ V    IT CLK   +++
Sbjct: 11  LCIVSYMMVRCDDITLCLKQENLNL 35


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 KLAGCWYIYPC 173
           K AG W I+PC
Sbjct: 74  KAAGHWVIHPC 84


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 KLAGCWYIYPC 173
           K AG W I+PC
Sbjct: 74  KAAGHWVIHPC 84


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 141 KLAGCWYIYPC 173
           K AG W I+PC
Sbjct: 74  KAAGHWVIHPC 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,653
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)