Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0152
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    33   0.24 
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea...    29   2.3  
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD...    29   2.3  
At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SD...    28   5.2  
At5g11870.1 68418.m01389 expressed protein                             28   6.9  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 51  SDYTEFNCITHLALFCSSNSLKYGII--GNELKLAGCWYIYPCG 176
           SD  EF C     + C+   +K G+I  GN +KL GC+  Y CG
Sbjct: 93  SDDVEF-CGLSCHIECAFREVKVGVIALGNLMKLDGCFCCYSCG 135


>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to will die slowly protein (WDS) (SP:Q9V3J8)
           [Drosophila melanogaster]
          Length = 523

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 363 GTNTILNCSSGFPVTQRLLMSINDDDYLPLGGPG 262
           G +  +NC S  P   R+L S +DD  + + GPG
Sbjct: 483 GHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPG 516


>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 289

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 490 LIYTILAIQTLEPVVLELNLADIDNMYLFVEKVYGICGHVDILVN 624
           L++ +   +  EP+++  +L   +N    VE+V    G +D+LVN
Sbjct: 85  LLHEVKTREAKEPIMIATDLGFEENCKRVVEEVVNSFGRIDVLVN 129


>At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SDR)
           family protein C-terminal similar to dormancy related
           protein GI:1220178 from [Trollius ledebourii]
          Length = 288

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 523 EPVVLELNLADIDNMYLFVEKVYGICGHVDILVNN 627
           EP+ +  +L   +N    V++V    G +D+L+NN
Sbjct: 94  EPIAIPTDLGFDENCKRVVDEVVNAFGRIDVLINN 128


>At5g11870.1 68418.m01389 expressed protein
          Length = 262

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 21  IYFSSVSQHASDYTEFNCITHLALFCSSNSLKYGIIGNELKLAGCWYIYPC 173
           ++ S + + A +    +C+  L LF S  S+ Y  + N+L+L   + + PC
Sbjct: 135 LFSSFLVERAGEKVGLSCLI-LLLFISCLSVAYARVFNDLRLCMTFQLIPC 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,289
Number of Sequences: 28952
Number of extensions: 319799
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)