Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0151
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    29   0.81 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   5.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 302 RLKYVIIISNLPSEWSKMKRGLVTKCPCILQSCTLIYQESSSPYLTL 442
           RL  ++++S +   WSK+    +     I+     +Y  +++PY+ L
Sbjct: 385 RLDLLLLVSEVSGRWSKLNDHGLASMKLIVSQVHSLYLSNNNPYMVL 431


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 ILQSCTLIYQESSSPYLTLCLLGSLLKFN--VQSGGSFYVSAVTLILLR 526
           I Q C+ I + +  P L    LG+LL+F   +  G  F  + V LI  R
Sbjct: 193 IFQLCSQILERAQKPSLIKATLGTLLRFLNWIPLGYIFETNIVELITNR 241


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 379  SLYSPIVYLNLPRVFFP 429
            S Y+P V+LNL  +FFP
Sbjct: 1379 SRYAPDVFLNLGSLFFP 1395


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 33  VGYYHHLIISNLPVITASTIPR 98
           +  +HHL++S+LP +  S I R
Sbjct: 89  IACFHHLLLSSLPCLPRSEIYR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,218
Number of Sequences: 5004
Number of extensions: 45836
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)