Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0151
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 29 4.5
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 29 4.5
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 29 4.5
SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.5
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032) 29 4.5
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 29 4.5
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8) 29 4.5
SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05) 29 4.5
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096) 29 4.5
SB_54661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) 28 7.9
>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 424 FPLSHIMPPWVSTKIQRPIWRVFLCFCGYTYFTSS 528
F ++ W+ I R ++ VFLCFC F SS
Sbjct: 149 FSVTRSSDRWIVGLIIRKLFVVFLCFCNTAIFRSS 183
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 192 HARKSSRPRHKQGLKVFNINFQSLKNKNC 220
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 196 HARKSSRPRHKQGLKVFNINFQSLKNKNC 224
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 196 HARKSSRPRHKQGLKVFNINFQSLKNKNC 224
>SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 74 HARKSSRPRHKQGLKVFNINFQSLKNKNC 102
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 178 HARKSSRPRHKQGLKVFNINFQSLKNKNC 206
>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
Length = 296
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 71 HARKSSRPRHKQGLKVFNINFQSLKNKNC 99
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 1343 HARKSSRPRHKQGLKVFNINFQSLKNKNC 1371
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 264 HARKSSRPRHKQGLKVFNINFQSLKNKNC 292
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 175 HARKSSRPRHKQGLKVFNINFQSLKNKNC 203
>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
Length = 554
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 23 HARKSSRPRHKQGLKVFNINFQSLKNKNC 51
>SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 521
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 196 HARKSSRPRHKQGLKVFNINFQSLKNKNC 224
>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 642 HLKKSSGVTHKRYNRIVNLLF*YVKNSNC 556
H +KSS HK+ ++ N+ F +KN NC
Sbjct: 196 HARKSSRPRHKQGLKVFNINFQSLKNKNC 224
>SB_54661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 97 DVSHYFHNVKRPCHYHGSFTLF 162
DV+ + H V PCH+HG + F
Sbjct: 17 DVTSHDHRVTPPCHFHGIHSNF 38
>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
Length = 324
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 265 NSYFSDCXTDVAVTCNNHSILKSFITYCSLL*INKIK*SYHDNDKVVLRCENN 107
N+Y+S+ + + ++ F C +N IK S+HD + ++CE+N
Sbjct: 55 NNYWSNLCARIQSAADTGNVKGMFDVGCPPKLLNFIK-SFHDGTRGTVKCESN 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,663,762
Number of Sequences: 59808
Number of extensions: 329581
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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