Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0151
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical pr...    29   3.0  

>AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical
           protein Y49C4A.2 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 20  CARHSRLLSSFNYI*STSNYCINNTKMFH--IIFTT*NDLVIIMVALLYFINSKQATISN 193
           C+    + S+  +     N C N+    H  IIFTT   L I++ A L+ +N  Q  ++N
Sbjct: 145 CSYQMEIPSTCRFFGCAINTCFNSFWSVHRTIIFTTIVILSILLAAKLFILNHFQLGVTN 204

Query: 194 K 196
           K
Sbjct: 205 K 205


>Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical
           protein C44B9.2 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 374 KCPCILQSCTLIYQESSSPYLTLCLLGSLLKFNVQSG 484
           KC  ++Q     Y++     LT+ + G LLK+N QSG
Sbjct: 278 KCEAVMQQAQ--YEKHPDGLLTVHINGMLLKYNTQSG 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,193,357
Number of Sequences: 27780
Number of extensions: 246538
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)