Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0151
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.21 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 377 CPCILQSCTLIYQESSSPYLTLCLLGSLLKF 469
           CP IL SC  IY +S    + LC+ G L  +
Sbjct: 176 CPLILGSCKCIYVQS----INLCMAGRLFGY 202


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 148 YHDNDKVVLRCENNVKHLGIVDAVITGRL 62
           YH++DK  L   N   HL I+   + G L
Sbjct: 210 YHNDDKTFLVWCNEEDHLRIISMQMGGDL 238


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379 SLYSPIVYLNLPRVFFPLSHIMPPWV 456
           S+   +V LN+     P +H+M PWV
Sbjct: 317 SICVTVVVLNV-HFRSPQTHVMAPWV 341


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 465 NSTSNLEGLFMFLRLHLFY 521
           N   N  G +MF  LHL Y
Sbjct: 37  NLLKNRTGRYMFTYLHLLY 55


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 358 TWPCYEMSLYSPIVY 402
           TW  Y  S ++PI+Y
Sbjct: 311 TWLGYSNSAFNPIIY 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,435
Number of Sequences: 438
Number of extensions: 3241
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)