Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0151
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /...    29   2.1  
At3g63150.1 68416.m07092 GTP-binding protein-related low similar...    29   2.1  
At1g04340.1 68414.m00424 lesion inducing protein-related similar...    28   6.5  
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit...    27   8.6  
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein...    27   8.6  

>At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 332

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 241 TDVAVTCNNHSILK---SFITYCSLL*INKIK*SYHDNDKVVLRCEN 110
           TD+  T   + I+K   S +TYC  + ++KI  +  D +K V+ C N
Sbjct: 269 TDIRGTSQRNEIIKIDCSEVTYCKDIVLDKIDIATVDGNKPVVECSN 315


>At3g63150.1 68416.m07092 GTP-binding protein-related low similarity
           to SP|Q38912 RAC-like GTP binding protein ARAC3
           (GTP-binding protein ROP6) {Arabidopsis thaliana};
           contains Pfam profile PF00036: EF hand (domain)
          Length = 643

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 323 ISNLPSEWSKMKRGLVTKCPCILQSCTLIYQESSSPYLTLCLLGSLLKFNVQSGGSFYVS 502
           +  L S W    R L  K P I+  C L  ++  SP     ++  ++K   +       S
Sbjct: 100 LDRLSSYWLPELRRLEIKAPVIVVGCKLDLRDERSPARLEDIMSPIMKEYREIETCIECS 159

Query: 503 AVTLILLRPE*F*FKPRVQL--LFLTY*KRRFTIRLYLLCVTPELFFKCTDFDVSGLI 670
           A+TLI + P+ F F  +  L   F  + + +  ++  L      +F  C D D+ G +
Sbjct: 160 ALTLIQV-PDVFYFASKAVLHPTFPLFDQEKQCLKPRLRRAVQRIFNLC-DHDLDGAL 215


>At1g04340.1 68414.m00424 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 159

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 95  KMFHIIFTT*NDLVIIMVALLYFINSKQATISNKR 199
           + F ++ T     V ++ ALL+FI  K +T S+KR
Sbjct: 113 RQFSLLLTEFLQSVALLGALLFFIGMKNSTTSSKR 147


>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
           factor identical to cleavage and polyadenylation
           specificity factor [Arabidopsis thaliana]
           SWISS-PROT:Q9LKF9
          Length = 739

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 24  LDTVGYYHHLIISN---LPVITASTIPRCFTLFSQRKTTLSLSW*LYFILLIQSKLQ*VI 194
           LDT+    HL +     LPV TA  +     +  Q  +    S+ +YF+  + S     +
Sbjct: 220 LDTIS--KHLEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYV 277

Query: 195 KDFRIEWL 218
           K F +EW+
Sbjct: 278 KSF-LEWM 284


>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
           similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
           esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
           thaliana}
          Length = 631

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 527 PE*F*FKPRVQLLFLTY*KRRFTIRLYLLCVTPEL-FFKCTDFDVSG 664
           P  F F P  + L + Y KR+   R   L + PE+  +KC  +D+ G
Sbjct: 7   PPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPG 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,909
Number of Sequences: 28952
Number of extensions: 226807
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)