Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0150
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864...    31   0.67 
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486...    30   1.6  
08_02_0894 + 22346027-22347925                                         29   4.8  

>08_02_0290 +
           15383473-15383669,15385057-15385267,15386389-15386440,
           15386545-15386863,15387022-15387121,15387391-15387657,
           15387780-15387857,15387943-15388032,15388119-15388168,
           15388267-15388366,15388777-15388875,15389023-15389136,
           15389238-15389412,15389726-15390132,15390565-15390639,
           15391412-15391438
          Length = 786

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 577 NLSTHPKPKKNADRGYFE--IRNVISLRIGVLCYFHIIY 687
           N S    PK+N D G+F    R +++L I V  +FHI Y
Sbjct: 630 NRSRTVVPKENTDEGFFRRFFRLLLALIIKVFAFFHIAY 668


>02_03_0127 +
           15547048-15547302,15547511-15548459,15548562-15548677,
           15548784-15548890,15550639-15550873,15550957-15551011,
           15551802-15551893
          Length = 602

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 473 NSCLQTETHYCFTADIDIVMVLTRAGSQDDLP 378
           +SCLQ  TH     DI+ +++     S DDLP
Sbjct: 245 SSCLQAATHQKLACDINRLVLFCNLHSNDDLP 276


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 551 AHRYQQHICMPITQLRHEF*VSI 483
           AHR Q   C+P TQLR E  +SI
Sbjct: 551 AHRVQSGWCVPDTQLREELRISI 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,549,486
Number of Sequences: 37544
Number of extensions: 343242
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)