Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0150
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53348| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_52559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_53348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 432 RYRYRDGTYPCRLTRRPATGGCILVELFYVSITVNILVP 316
           R   ++   PC + + P    C +  L YV  T+N+ +P
Sbjct: 32  RISLQENEIPCNIAQLPRFTNCAIERLMYVERTINVNLP 70


>SB_52559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 498 VLGLNFAVQQLPSNRNALLLHGRYRYRDGTYPCRLTRRPATGGCILVELFYVSITVN-IL 322
           V G  +   Q+    +    +GRY   D T+PC  +     GG     ++ V   V   L
Sbjct: 4   VKGFRYCALQINDQCHCGNSYGRYGKGDCTHPCEGSPDLKCGGTWRNSVYAVEAEVKPPL 63

Query: 321 VPIHKTSNTNVKKTAYV*RTHV 256
            P H+   TN + +A + R HV
Sbjct: 64  QPGHEYMYTNPQGSAPLTRDHV 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475,076
Number of Sequences: 59808
Number of extensions: 428615
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)