Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0150
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.            31   3.0  
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.               31   3.0  

>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
          Length = 6884

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 253  LQSALRLLNEVSIKFRLPLITNLRIDSIRSHNDIC 149
            L+++L +LN++  + + PL+ NL I  I++  D C
Sbjct: 3157 LETSLHVLNQIKSQLQQPLLINLEIKHIQNEKDNC 3191


>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
          Length = 6885

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 253  LQSALRLLNEVSIKFRLPLITNLRIDSIRSHNDIC 149
            L+++L +LN++  + + PL+ NL I  I++  D C
Sbjct: 3158 LETSLHVLNQIKSQLQQPLLINLEIKHIQNEKDNC 3192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,668,808
Number of Sequences: 237096
Number of extensions: 1937984
Number of successful extensions: 2990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)