Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0150
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    31   0.61 
AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical...    28   5.7  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    28   7.5  

>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 268 THTRILQSALRLLNEVSIKFRLPLITNLRIDSIRSHNDICIL 143
           T TR+  S+LR    ++ +FR  L+  LR DS R    I IL
Sbjct: 337 TSTRLTASSLRYSGNITTEFRRKLVKLLRTDSFRDTQWITIL 378


>AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical
           protein F43E2.1 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 232 LNEVSIKFRLPLITN-LRIDSIRSHNDICILKNIYLFVCAF 113
           L E+  +F+ PL  N + +   R  ND+ +++ +YLF C +
Sbjct: 257 LAELRHEFKFPLDENTISMHRKRPSNDLTVVQLLYLFACQY 297


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 178 DSIRSHNDICILKNIYLFVCAFMGSTTRYML 86
           D++   N +CILK+ +LFV A  G+   Y +
Sbjct: 332 DTVPPANALCILKSGFLFVAAEFGNHELYQI 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,972
Number of Sequences: 27780
Number of extensions: 323103
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)