Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0150
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19130.2 68418.m02277 GPI transamidase component family prote...    31   0.98 
At5g19130.1 68418.m02276 GPI transamidase component family prote...    31   0.98 
At1g21330.1 68414.m02667 hypothetical protein                          29   2.3  

>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 640 HFESQNIHDLHFF*A*DAWTSLTGVKCLPERIDINSIYVCP 518
           H E    H LHFF   D++T L  V C    +++  I   P
Sbjct: 125 HPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAP 165


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 640 HFESQNIHDLHFF*A*DAWTSLTGVKCLPERIDINSIYVCP 518
           H E    H LHFF   D++T L  V C    +++  I   P
Sbjct: 128 HPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAP 168


>At1g21330.1 68414.m02667 hypothetical protein
          Length = 211

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 481 KIET*NSCLSWVMGIHICC*YLCAPVST*HQL 576
           ++ T +  L W MG++ CC +  APV T + L
Sbjct: 68  RLSTGDRMLQWNMGVNSCCVFCHAPVETRNHL 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,625
Number of Sequences: 28952
Number of extensions: 282301
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)