Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0149
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 2e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 93 4e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 81 1e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 9e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 1e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 39 6e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.7
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 9.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.7
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (396), Expect = 2e-41
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
Y N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQ 353
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGPGIV+RKCF
Sbjct: 354 QMWISKQEYDESGPGIVYRKCF 375
Score = 154 bits (373), Expect = 1e-38
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELP GQVITIGNERFR PEALFQPS LG
Sbjct: 209 VRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALG 268
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
+E+ GIHE YNSIMKCDVDIRKD
Sbjct: 269 LENAGIHEATYNSIMKCDVDIRKD 292
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 92.7 bits (220), Expect = 4e-20
Identities = 40/83 (48%), Positives = 58/83 (69%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VR++KEKLCYV+ D E + + +T L ++Y LP G+VI +G+ER+ CPE LFQP +G
Sbjct: 209 VREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVG 268
Query: 182 MESCGIHETVYNSIMKCDVDIRK 250
E G+ E ++++I DVDIRK
Sbjct: 269 SEQPGLSEFIFDTIQAADVDIRK 291
Score = 56.8 bits (131), Expect = 3e-09
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 12/85 (14%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIG 402
Y V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IG
Sbjct: 294 YRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIG 353
Query: 403 GSILAS-LSTFQQMWISKEEYDESG 474
G++LA ++ MW+SK E++E G
Sbjct: 354 GAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 81.0 bits (191), Expect = 1e-16
Identities = 36/82 (43%), Positives = 50/82 (60%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VR+IKEK CYVA DF E+ + +Y+LP Q IT+G E F PE LF P +G
Sbjct: 214 VREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMG 273
Query: 182 MESCGIHETVYNSIMKCDVDIR 247
E+ G+H ++ SI+ D+D+R
Sbjct: 274 SEASGLHIQLFKSILLSDIDLR 295
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/82 (42%), Positives = 57/82 (69%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
Y+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+
Sbjct: 299 YSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFR 358
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
++ I+ EEY ++ ++ R+ F
Sbjct: 359 RLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Frame = +1
Query: 262 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTF 432
N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407
Query: 433 QQMWISKEEYDESGP---GIVHRKC 498
Q+WIS++EY+E G ++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432
Score = 31.5 bits (68), Expect(2) = 0.003
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 65 AAASTSLEKSYELPXGQVITIGNERFRCPEALFQP 169
++ +T E +E P G + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 24.2 bits (50), Expect(2) = 0.003
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 194 GIHETVYNSIMKCDVDIR 247
GI + N I +CDVDIR
Sbjct: 326 GIPQLFQNCISECDVDIR 343
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 9e-14
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = +1
Query: 262 NTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQ 435
N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 436 QMWISKEEYDESG 474
+W+SK+EYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
Score = 51.2 bits (117), Expect = 1e-07
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Frame = +2
Query: 65 AAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 217
A AS+ K +E P G G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 218 SIMKCDVDIR 247
SI+ CD ++R
Sbjct: 331 SILACDSELR 340
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Frame = +1
Query: 250 GPYANTVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKY 387
G Y N V+SGG+T++ +R+Q+++ + I + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 388 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 492
+VW GGS+LA F +K +Y+E G I R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +2
Query: 11 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPXGQVITI--GNERFRCPEALFQPSFL 178
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 179 GME-SCGIHETVYNSIMKCDVDIRK 250
+ + E V N + +D+RK
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRK 324
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 259 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 438
+N +++GG PG+ R+++E+T++ P I + W G S + F+
Sbjct: 636 SNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKA 695
Query: 439 MWISKEEYDESGP 477
+++EEY E GP
Sbjct: 696 AKVTREEYLEKGP 708
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 134 ERFRCPEALFQPSFLGMESCGIHETVYNSIMK 229
E+ R PE +F PS +G++ GI E + SI++
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE-IMRSILQ 624
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.4 bits (100), Expect = 1e-05
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPX------------------GQVI 121
V +IKE +CYV+ +F+++M + LE Y LP QV+
Sbjct: 215 VNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVL 274
Query: 122 TIGNERFRCPEALFQPSFLGMESCGIHETVYNSI 223
+ NERF PE LF PS + + GI E V S+
Sbjct: 275 NLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 262 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 441
N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380
Query: 442 WISKEEYDESGPGIVHRK 495
I++ EY E G I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLS 426
Y++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 530 YSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIR 589
Query: 427 TFQQMWISKEEYDESGPGIVHRK 495
++WI ++ G ++ K
Sbjct: 590 IVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 394 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 495
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 319 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 429
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 265 CWRTVLTDVDVALHDGV 215
CW+ + D D+ LHD +
Sbjct: 1151 CWQAIKNDPDLGLHDKI 1167
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 244 P*GPYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 378
P G A +V +GG+ +PGI + I+A+ P ++ + I P+
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAIL---ISAICPHSLSFRPIILPD 446
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 345 DHQDQDHRSPREEVLRMDRWIHPG 416
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 572 LTVAFRTRTSTTPHSTGFTRPP 507
L V R +TP+ST F+ PP
Sbjct: 688 LYVLLNMRAKSTPNSTSFSSPP 709
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,034
Number of Sequences: 5004
Number of extensions: 42631
Number of successful extensions: 132
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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