Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0149
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 9e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 167 9e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 1e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 166 1e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 2e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 146 1e-35
SB_54| Best HMM Match : Actin (HMM E-Value=0) 103 2e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 56 3e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 2e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 52 5e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 39 0.003
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.4
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.4
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_58889| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4) 28 7.7
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 28 7.7
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 169 bits (411), Expect = 2e-42
Identities = 77/82 (93%), Positives = 81/82 (98%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 268 YANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 327
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 328 QMWISKQEYDESGPAIVHRKCF 349
Score = 163 bits (397), Expect = 9e-41
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQEM TAA+S+S+EKSYELP GQVITIGNERFRCPEAL QPSFLG
Sbjct: 183 VRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLG 242
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 243 MESSGIHETTYNSIMKCDVDIRKD 266
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 167 bits (405), Expect = 9e-42
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 257 YANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 316
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 317 QMWISKQEYDESGPAIVHRKCF 338
Score = 166 bits (404), Expect = 1e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELP GQVITIGNERFRCPEA+FQPSFLG
Sbjct: 172 VRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 231
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 232 MESAGIHETTYNSIMKCDVDIRKD 255
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 167 bits (405), Expect = 9e-42
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELP GQVITIGNERFRCPEA+FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 269
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 270 MESAGIHETTYNSIMKCDVDIRKD 293
Score = 165 bits (401), Expect = 3e-41
Identities = 75/82 (91%), Positives = 80/82 (97%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 354
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 355 QMWISKQEYDESGPSIVHRKCF 376
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 166 bits (404), Expect = 1e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELP GQVITIGNERFRCPEA+FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 269
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 270 MESAGIHETTYNSIMKCDVDIRKD 293
Score = 165 bits (402), Expect = 2e-41
Identities = 75/82 (91%), Positives = 80/82 (97%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 295 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 354
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 355 QMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 166 bits (404), Expect = 1e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELP GQVITIGNERFRCPEA+FQPSFLG
Sbjct: 209 VRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 268
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 269 MESAGIHETTYNSIMKCDVDIRKD 292
Score = 165 bits (402), Expect = 2e-41
Identities = 75/82 (91%), Positives = 80/82 (97%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 353
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 354 QMWISKQEYDESGPSIVHRKCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 166 bits (403), Expect = 2e-41
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VRDIKEKL YVALDFEQEMATAAAS+SLEKSYELP GQVITIGNERFRCPEA+FQPSFLG
Sbjct: 209 VRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 268
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
MES GIHET YNSIMKCDVDIRKD
Sbjct: 269 MESAGIHETTYNSIMKCDVDIRKD 292
Score = 163 bits (397), Expect = 9e-41
Identities = 74/82 (90%), Positives = 80/82 (97%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
YANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQ
Sbjct: 294 YANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQ 353
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWISK+EYDESGP IVHRKCF
Sbjct: 354 QMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 146 bits (354), Expect = 1e-35
Identities = 65/82 (79%), Positives = 75/82 (91%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
Y+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQ
Sbjct: 68 YSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQ 127
Query: 436 QMWISKEEYDESGPGIVHRKCF 501
QMWI+KEEY E GP IVHRKCF
Sbjct: 128 QMWIAKEEYHEYGPPIVHRKCF 149
Score = 110 bits (264), Expect = 1e-24
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +2
Query: 68 AASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 247
A S LEK+YELP GQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 248 KD 253
KD
Sbjct: 65 KD 66
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 103 bits (246), Expect = 2e-22
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
+RD+KE LCY A+D+E+E+ A S E Y LP GQ I IG+ERFR E LFQPS LG
Sbjct: 2254 IRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLG 2313
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
+ GIHE+++ SI KCD+D+R +
Sbjct: 2314 RDIDGIHESIFKSIKKCDIDLRAE 2337
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLG 181
VR +KEKLCYV + EQE A +T L + Y LP G+V+ + ERF PEALFQP +
Sbjct: 213 VRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLIN 272
Query: 182 MESCGIHETVYNSIMKCDVDIRKD 253
+E G+ E ++N+I D+D R +
Sbjct: 273 VEGVGVAELLFNTIQAADIDTRSE 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITA-LAPSTIKIKIIAPPERKYSVWIGGSILAS-LST 429
Y V+ G T+ Q +TA KI+I PP RK+ V++GG++LA +
Sbjct: 325 YLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMKD 384
Query: 430 FQQMWISKEEYDESG 474
W++++EY+E G
Sbjct: 385 KDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 56.0 bits (129), Expect = 3e-08
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Frame = +1
Query: 256 YANTVMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIKIIAPPERKY 387
Y N V+SGG+TM+ R+Q++I + P I+ ++I+ ++Y
Sbjct: 243 YKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRY 302
Query: 388 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 501
+VW GGS+LAS F + +K +YDE GP I F
Sbjct: 303 AVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRK 250
+ + ERF PE F P F + + + E V N I C +D+R+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRR 240
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFL 178
V DIKEK+CY++ D +E+ + L K Y LP GQ+I+IG E E LF+P L
Sbjct: 840 VNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/61 (34%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Frame = +1
Query: 250 GPYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIA---PPERKYSVWIGGSILAS 420
G + + +++GG T+ G +R+ +E+ + P ++++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 421 L 423
L
Sbjct: 230 L 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 262 NTVMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ERKYSVWIGGSIL 414
N V+ GGT M PG R+ +EI L S IK +K+ PP + W+GG+I
Sbjct: 80 NIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIF 139
Query: 415 ASLSTFQQMWISKEEYDE 468
SL ++E Y +
Sbjct: 140 GSLEVLADRSTTRERYQQ 157
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 2 VRDIKEKLCYVALDFEQEM 58
VRDIKEKLCYVALDF QE+
Sbjct: 88 VRDIKEKLCYVALDFYQEI 106
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 149 PEALFQPSFLGMESCGIHETV 211
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 300 YRRQDAEGDHRXRALDHQDQDHRSPREE 383
+RRQDA DHR + DH QD PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 410 MDPPIHTEYFLSGGAMILILMVEGAXAVISFCILSAIPGYMV-VPPD 273
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 262 NTVMSGGTTMYPGIADRMQKEITALAP 342
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 282 YHHVPRYRRQ--DAEGD--HRXRALDHQD-QDHRSPREEVLRMD 398
YHH R R Q E D HR + LDH+ Q H++ R + +D
Sbjct: 131 YHHTHRQRSQYKPRENDSLHRRKPLDHERYQHHQTTRHDDQTLD 174
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 259 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 378
AN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_58889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -1
Query: 632 IRIDGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGFTRPPA*KHLRWTMPGPDSSYSS 453
+R DG R ++F+GI + ++ F ++ P +T PP + +R P+S Y+S
Sbjct: 14 VRNDGTRPPIEFAGIDKLDICDYCFIEVMTSPPQAT----PPTVRTIR-----PESYYNS 64
Query: 452 FEI 444
+
Sbjct: 65 LAV 67
>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
Length = 126
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 303 RRQDAEGDHRXRALDHQDQDHRSPREEVLRMDRWIHPGFP 422
RRQ HR R D +D+D R L DR+ + +P
Sbjct: 4 RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 609 RCSVLRYH*VQRTDGCVQNSDEHNTTQHRVHAAACLEALAVDDAGAGLV 463
R V+ H VQR + ++ +E QHR H +E +D G +
Sbjct: 115 RMKVINSHKVQRMEQAKKHKEEIEKNQHRPHHIPIVEKTNEEDKEVGRI 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,198,137
Number of Sequences: 59808
Number of extensions: 371949
Number of successful extensions: 1243
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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