Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0149
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             136   2e-34
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  136 bits (329), Expect = 2e-34
 Identities = 62/67 (92%), Positives = 65/67 (97%)
 Frame = +2

Query: 53  EMATAAASTSLEKSYELPXGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKC 232
           EMATAA+S+SLEKSYELP GQVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 233 DVDIRKD 253
           DVDIRKD
Sbjct: 61  DVDIRKD 67



 Score =  134 bits (323), Expect = 9e-34
 Identities = 62/65 (95%), Positives = 65/65 (100%)
 Frame = +1

Query: 256 YANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 435
           YANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGSILASLSTFQ
Sbjct: 69  YANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQ 128

Query: 436 QMWIS 450
           QMWIS
Sbjct: 129 QMWIS 133


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 623 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGFT 516
           D  +LD  F   T+ N + ++ R++ STT    G T
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPT 389


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 246 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 157
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 246 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 157
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,965
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)