Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0148
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...   125   8e-28
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.6  
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL...    33   8.0  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score =  125 bits (302), Expect = 8e-28
 Identities = 79/137 (57%), Positives = 85/137 (62%), Gaps = 18/137 (13%)
 Frame = -1

Query: 502  RPVMTYASVVFAHAVCTHVDALQSLQAXXXXXXXXXXXXRINPET------------LKS 359
            RPVMTYASVVFAHA  TH+D LQSLQ+              N +             +KS
Sbjct: 819  RPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKS 878

Query: 358  ASERYFYKA--HNNRLIVAAADYSPNRDHAGASHR*RXDTSLW--IHPITLALDALRSNT 191
             SERYF KA  H+NRLIVAAADYSPN DHAGASHR R    L     PITLALD   SNT
Sbjct: 879  VSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNT 938

Query: 190  RS--KDPGNRTRRTRQR 146
            RS  + PGNRTRRTRQR
Sbjct: 939  RSRLRSPGNRTRRTRQR 955



 Score = 36.7 bits (81), Expect = 0.49
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 417 RNVDLHNDLSLESIRKHL 364
           RNVDLH+DL LESIRKH+
Sbjct: 859 RNVDLHDDLGLESIRKHM 876


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -1

Query: 121 PLSFSPDLLNGSRF*SGSRF 62
           PLSFSPDLL+GSRF +G+ +
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVLGA
           - Dugesia japonica (Planarian)
          Length = 726

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 202 RSNTRSKDPGNRTRRTRQRVQPNLKISPLSFSPDLLN 92
           + N+  K P N    T++ V P+L+  P SFS D LN
Sbjct: 22  QDNSAQKAPSNNNEDTQKYVPPHLRNKPKSFSSDNLN 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,043,350
Number of Sequences: 1657284
Number of extensions: 11290840
Number of successful extensions: 25715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25704
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)