Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0148
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   0.45 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   9.7  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 235 IHPITLALDALRSNTRSKDPGNRTRRTRQRVQPNLKISPLSFSPDLLNGS 86
           +HP T  LD   S T SKD  +    T+  + P L    L  SP ++  S
Sbjct: 41  LHPFTSGLDEKASGTASKDRKSGRAGTKSLLTPELTPHYLGKSPRIIRVS 90


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 471 LLTRSAHT*TP--FNPYKPGRNVDLHNDLSLESIRK 370
           +LTRS     P  F+P+   RN+ LH  +S + +RK
Sbjct: 1   MLTRSVLRKAPRAFSPFLQKRNLALHEYISHDILRK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,376
Number of Sequences: 5004
Number of extensions: 45808
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)