Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0148
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38046| Best HMM Match : Homoserine_dh (HMM E-Value=0)               29   3.4  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         28   5.9  

>SB_38046| Best HMM Match : Homoserine_dh (HMM E-Value=0)
          Length = 537

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 226 ITLALDALRSNTRSKDPGNRTRRTRQRVQPNLKISPLSFSP 104
           + LAL  + S   + DP    R T + V PNL I  ++ SP
Sbjct: 8   VALALSLVSSIGVAADPDQAIRNTLKAVDPNLPIEAIAESP 48


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 502  RPVMTYASVVFAHAVCTHVDALQSLQ 425
            RP+  YASV+F++  C   +AL+ +Q
Sbjct: 4175 RPITEYASVIFSNIPCYLSEALEKIQ 4200


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 12  ERLQRKLNNARVAASRMNLLPDQNRDPLRRSGEKLSGL 125
           + L+RKLNN  V A+R+N L  ++   L  +   +  L
Sbjct: 545 DELKRKLNNIEVEAARLNSLVQESEKGLGSASSHIDSL 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,118
Number of Sequences: 59808
Number of extensions: 359172
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)